Hi Kasper, I also installed a clean devel version today and had no such problems,
also https://www.bioconductor.org/developers/how-to/useDevel/ works for me and says that using an R-devel version is necessary to use Bioc-devel. I also get the correct BiocInstaller version: > biocLite() > BioC_mirror: https://bioconductor.org > Using Bioconductor 3.3 (BiocInstaller 1.21.1), R Under development > (unstable) > (2015-10-19 r69546). > Installing package(s) ‘IRanges’, ‘AnnotationDbi’ > Warning: dependency ‘IRanges’ is not available > There is however the IRanges issue I was asking about earlier. Maybe clean the library and try again? Best wishes, Bernd On Di, 2015-10-20 at 10:55 -0400, Kasper Daniel Hansen wrote: > So I have an R-devel where I have a previous (pre-bioc-3.2) installed > version of BiocInstaller. > > 1) I re-compile R-devel today. > 2) I run > source("http://www.bioconductor.org/biocLite.R";) > which gives me BiocInstaller 1.20.0. However, the current one for > Bioc-devel is 1.21.1. > > When I try to push to a higher level version, by doing > library(BiocInstaller) > useDevel(TRUE) > I get > > > useDevel(TRUE) > Error: 'devel' version requires a more recent R > > If I now try to upgrade I get > > biocLite("BiocUpgrade") > Error: Bioconductor version 3.2 cannot be upgraded with R version 3.3.0 > > This all looks problematic. How to I upgrade to Bioc-devel using R-devel? > Btw. there are no instructions anymore at > https://www.bioconductor.org/developers/how-to/useDevel/ > > Best, > Kasper > > [[alternative HTML version deleted]] > > _______________________________________________ > [email protected] mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
