It is this commit ------------------------------------------------------------------------ r69509 | hornik | 2015-10-12 07:06:54 -0400 (Mon, 12 Oct 2015) | 1 line
Fixes for PR #16240 and PR #16550. ------------------------------------------------------------------------ which is failing when z$url == meta$URL[1] == NULL. I have bcc'd Kurt Hornik Martin ________________________________________ From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Leonardo Collado Torres [lcoll...@jhu.edu] Sent: Tuesday, November 03, 2015 10:50 PM To: bioc-devel@r-project.org Subject: [Bioc-devel] citation() error for BiocParallel and S4Vectors Hi, The daily build report showed a similar error in several of my packages when building on Linux and Windows. I was able to reproduce this error under R-devel on Windows and it pops up when using the citation() function. In particular with BiocParallel and S4Vectors. This error doesn't pop up in the build report for BiocParallel or S4Vectors and I believe that's because they are not using the citation() function in their vignettes. However, I would have guessed that this error would affect the Bioc-devel landing pages but it hasn't. I haven't found any leads when looking at the DESCRIPTION files for these packages (they don't have a inst/CITATION file). So my guess is that this is really a bug in citation() for R-devel. If anyone has a guess please let me know. I didn't see a thread about this in R-devel (last 3 months) so I'll likely re-post this there if needed. Thanks, Leo > citation('BiocParallel') Error in if (!length(z$url) && !is.na(url <- meta$URL[1L])) { : missing value where TRUE/FALSE needed In addition: Warning messages: 1: In citation("BiocParallel") : no date field in DESCRIPTION file of package ‘BiocParallel’ 2: In is.na(url <- meta$URL[1L]) : is.na() applied to non-(list or vector) of type 'NULL' > traceback() 1: citation("BiocParallel") > citation('S4Vectors') Error in if (!length(z$url) && !is.na(url <- meta$URL[1L])) { : missing value where TRUE/FALSE needed In addition: Warning messages: 1: In citation("S4Vectors") : no date field in DESCRIPTION file of package ‘S4Vectors’ 2: In is.na(url <- meta$URL[1L]) : is.na() applied to non-(list or vector) of type 'NULL' > traceback() 1: citation("S4Vectors") > sessionInfo() R Under development (unstable) (2015-11-02 r69589) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1 locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base > packageVersion('BiocParallel') [1] ‘1.5.0’ > packageVersion('S4Vectors') [1] ‘0.9.6’ _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel