Sounds very useful. Perhaps you could make a github pull request on the Bioconductor mirrors of those packages. Then Tengfei or I could look it over.
Btw, I like the filtering functionality in ensemldb. Would be nice to have something as rich for TxDb. Would be great if there were convenience wrappers like subset() and sort(). Like transcripts(sort(subset(db, seqname == "chr1"), by = geneSymbol)). Thanks, Michael On Mon, Dec 14, 2015 at 4:12 AM, Rainer Johannes <johannes.rai...@eurac.edu> wrote: > Dear all, > > I’ve modified the biovizBase and ggbio packages so that they do directly > support EnsDb annotations (just like annotations provided by TxDb > objects/packages). > Is there a way I could provide these changes? I’ve directly contacted Tengfei > last week, but did not get any reply yet… > > cheers, jo > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
