I’m getting an error that R cannot be found on the nightly build server. Obviously it can be found at some point, since R CMD build started, but at the moment of calling R CMD SHLIB it can’t be found again.
I was wondering if anything had changed on the server, or maybe I’m doing my Makefile wrong. The error only happens on the linux server: mac (oaxaca) and windows (moscato1) build fine. And I can’t reproduce this on my local linux server with a fresh checkout. Nightly build <http://bioconductor.org/checkResults/release/bioc-LATEST/AnalysisPageServer/zin1-buildsrc.html> results: ############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnalysisPageServer ### ############################################################################## ############################################################################## * checking for file ‘AnalysisPageServer/DESCRIPTION’ ... OK * preparing ‘AnalysisPageServer’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘AnalysisPageServer’ ... ** libs ** arch - R CMD SHLIB AnalysisPageSVG.cpp tinyxml2.cpp cor.cpp catch.c SearchReplace2.cpp R_init_AnalysisPageServer.cpp -o AnalysisPageServer.so /bin/bash: R: command not found make: *** [AnalysisPageServer] Error 127 ERROR: compilation failed for package ‘AnalysisPageServer’ * removing ‘/tmp/RtmpREgK1P/Rinst3e5828c9cd0f/AnalysisPageServer’ ----------------------------------- ERROR: package installation failed and the contents of src/Makefile: AnalysisPageServer: AnalysisPageSVG.cpp tinyxml2.cpp cor.cpp AnalysisPageSVG.h tinyxml2.h cor.h catch.c SearchReplace2.cpp SearchReplace2.h catch.h R CMD SHLIB AnalysisPageSVG.cpp tinyxml2.cpp cor.cpp catch.c SearchReplace2.cpp R_init_AnalysisPageServer.cpp -o AnalysisPageServer.so clean: rm *.o *.so [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
