Thanks Johannes, this is a valuable contribution and I've added it to the 'official' vignette.
Martin ________________________________________ From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Rainer Johannes [johannes.rai...@eurac.edu] Sent: Thursday, January 07, 2016 9:10 AM To: Bioc-devel Subject: [Bioc-devel] Use of EnsDb in the AnnotationDbi framework Dear all, thanks to Vince’s suggestion I have now implemented the central AnnotationDbi methods “columns”, “keys”, “keytypes” and “select” for EnsDb objects in my ensembldb package version 1.3.11 (EnsDb are TxDb like annotation packages/objects tailored to Ensembl based annotations). Thus, EnsDb based annotation packages can now be used in the AnnotationDbi framework. The methods support in addition also the filter framework of the ensembldb package to provide some more fine grained querying and data retrieval. I have forked the AnnotationDbi package and added a section to its “IntroToAnnotationPackages.Rnw” vignette describing how to use EnsDb objects along with the above mentioned methods (https://github.com/jotsetung/AnnotationDbi). Eventually this could also be inserted to the “official” AnnotationDbi package. best, jo _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
