Seems to be an issue with the theme. I filed https://github.com/rstudio/rmarkdown/issues/630 . Dan
----- Original Message ----- > From: "Dan Tenenbaum" <dtene...@fredhutch.org> > To: "Zach Skidmore" <zskid...@genome.wustl.edu> > Cc: "bioc-devel" <bioc-devel@r-project.org> > Sent: Saturday, February 27, 2016 10:39:22 AM > Subject: Re: [Bioc-devel] GenVisR vignette build issues > ----- Original Message ----- >> From: "Zach Skidmore" <zskid...@genome.wustl.edu> >> To: "bioc-devel" <bioc-devel@r-project.org> >> Sent: Saturday, February 27, 2016 10:04:19 AM >> Subject: [Bioc-devel] GenVisR vignette build issues > >> Hi All, >> >> Recently the vignette in the GenVisR package has been causing Check >> Errors, Specifically the error is: >> >> pandoc: Could not fetch /tabsets.js >> /tabsets.js: openBinaryFile: does not exist (No such file or directory) >> Error: processing vignette 'GenVisR_intro.Rmd' failed with diagnostics: >> pandoc document conversion failed with error 67 >> Execution halted >> >> I cannot reproduce the error on my local system, some searching suggests >> that the problem might be with rmarkdown however I have the latest >> version installed. Is there anyway to tell what version Bioc is using? >> > > Yes, on the build report page > (https://www.bioconductor.org/checkResults/devel/bioc-LATEST/) there is a > table > listing the build machines and the rightmost column (installed pkgs) is > clickable, it tells you what version of each package is installed on each > machine. In this case version 0.9.5 of rmarkdown is installed on all 3 > machines. > > Note that the Bioconductor build system cannot install anything newer than > what > is on CRAN or Bioconductor (for example, nothing from GitHub). What version of > rmarkdown are you using? > > Also, what version of pandoc (pandoc --version)? The build system has > installed > 1.13.2 (on zin2), 1.16.0.1 (morelia) and 1.16.0.2 (moscato2). > > And while we're at it, what version of R? Be sure to use a recent R-devel. > > Dan > >> Zach >> >> -- >> Zachary L. Skidmore >> Staff Scientist >> McDonnell Genome Institute >> Washington University in Saint Louis >> >> >> >> ____ >> This email message is a private communication. The information transmitted, >> including attachments, is intended only for the person or entity to which it >> is >> addressed and may contain confidential, privileged, and/or proprietary >> material. Any review, duplication, retransmission, distribution, or other use >> of, or taking of any action in reliance upon, this information by persons or >> entities other than the intended recipient is unauthorized by the sender and >> is >> prohibited. If you have received this message in error, please contact the >> sender immediately by return email and delete the original message from all >> computer systems. Thank you. >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
