`covr::codecov()` _has_ to be run on a git repository unless both the commit and branch are given as arguments which is the cause of your error `Error: running command ''git' 'rev-parse' '--abbrev-ref' 'HEAD'' had status 128`.
The coverage of your package in both devel ( http://bioconductor.org/packages/devel/bioc/html/ChIPpeakAnno.html) and release ( http://bioconductor.org/packages/release/bioc/html/ChIPpeakAnno.html) looks to be properly populated now, so this must be fixed. On Mon, Mar 7, 2016 at 9:34 AM, Ou, Jianhong <jianhong...@umassmed.edu> wrote: > Hi, > > The test coverage status for ChIPpeakAnno devel version is shown as > unknown. I tried covr::package_coverage(clean=FALSE), it reports: > ChIPpeakAnno Test Coverage: 40.49% > However, when I try codecov() > I got error: Error: running command ''git' 'rev-parse' '--abbrev-ref' > 'HEAD'' had status 128 > > Could any one help me to fix this problem? Thanks a lot. > > Yours Sincerely, > > Jianhong Ou > > TEL: 508-856-5379 > LRB 608 > Bioinformatician of Bioinformatics core at > Department of Molecular, Cell and Cancer Biology > 364 Plantation Street Worcester, > MA 01605 > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
