On Fri, Mar 4, 2016 at 7:33 AM, Dan Tenenbaum <dtene...@fredhutch.org> wrote:
> There are a number of variables defined. You could check to see if the > variable BBS_HOME is defined (it does not matter what the value is in your > case, just whether it is defined or not). > > Dan > > > ----- Original Message ----- > > From: "Thomas Dybdal Pedersen" <thomas...@gmail.com> > > To: "bioc-devel" <bioc-devel@r-project.org> > > Sent: Friday, March 4, 2016 1:17:38 AM > > Subject: [Bioc-devel] Identify Bioc build machines > > > Hi > > > > Are there any environment variables set on the bloc build machines that > unique > > identify them as such? The reason I ask is that I’m planning to create a > > testthat PR that adds a skip_on_bioc (similar to skip_on_cran) function. > While > > I know you generally shouldn’t skip unit tests on build machines, some > tests > > can be prohibitively heavy and cause the check to timeout - In these > cases it > > would be better to have the unit tests and run them locally but have them > > automatically skipped on bio builds… > I would argue that tests like that, while valuable, belong in a different place, as they are unlikel to be run every time, even locally. IIRC testthat can take a directory in which to look for your tests, so putting them in inst/extra_tests (for example) and running that as needed locally would work. Basically, I'm saying that heavy unit-tests are (can) be good, but it's not clear they should be check tests. Alternatively, you could simply modify your pkg/tests/test.R script (or whathaveyou) so that it checks for an enviroment variable to turn on/off certain tests. Build platforms won't have your package's special env variables set, so they won't be run in this case. This, if documented, would make it easy for users or build systems to run those tests if they want (our internal build system would not want to be skipping tests in a situation like this, for example, as correctness is more valuable than time to us). Best, ~G > > > > best > > > > Thomas > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel -- Gabriel Becker, Ph.D Associate Scientist Bioinformatics and Computational Biology Genentech Research [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
