Check Jim Hester's thoughts on this issue https://github.com/travis-ci/travis-ci/issues/5809#issuecomment-199858950
One way of solving it is by having BiocInstaller allow using Bioc-devel with R 3.4.0. On Tue, Mar 22, 2016 at 10:43 AM, Leonardo Collado Torres <lcoll...@jhu.edu> wrote: > Hi, > > This is definitely 4 weeks early and things are working as intended. > Due to https://github.com/travis-ci/travis-ci/issues/5809 I noticed > that BiocInstaller does not yet support R 3.4.0. The main issue was my > assumption that R-travis using `r: devel` would install R 3.3.0 as I > describe in the issue I linked above. > > I was failing to see this because builds for `regionReport` were > completing successfully. However, builds for `derfinderPlot` failed > and that's because `derfinderPlot` has Bioc-devel dependencies > (S4Vectors >= 0.9.38). Thanks to Jim Hester I realized that both > packages were being tested on R 3.4.0, and that BiocInstaller after > failing would then default on Bioc-release. See > https://travis-ci.org/leekgroup/derfinderPlot/builds/117500745#L419-L420 > and https://travis-ci.org/leekgroup/regionReport/builds/117499393#L418-L419 > > Bioconductor version 3.2 (BiocInstaller 1.20.1), ?biocLite for help > Bioconductor does not yet support R version 3.4.0 > > As for BiocInstaller, I'm a bit curious why it falls back to > Bioc-release instead of Bioc-devel when trying to use it in a future R > version that is not yet supported. > > In any case, I can fix my R-travis builds by specifying that I want > them to be run on R 3.3.0 for now. > > I'm guessing that other developers who use R-travis might run into > this issue in these 4 weeks before R 3.3.0 is released. > > Best, > Leo > > Leonardo Collado Torres, PhD Candidate > Department of Biostatistics > Johns Hopkins University > Bloomberg School of Public Health > Website: http://lcolladotor.github.io/about.html _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
