Please make the change yourself using the git mirrors. https://bioconductor.org/developers/how-to/git-mirrors/
Dan ----- Original Message ----- > From: "lcollado" <lcoll...@jhu.edu> > To: "bioc-devel" <bioc-devel@r-project.org> > Cc: "Rafael Irizarry" <r...@jimmy.harvard.edu> > Sent: Thursday, March 24, 2016 1:59:02 PM > Subject: [Bioc-devel] NAMESPACE issue in bumphunter > Hi, > > I found a NAMESPACE issue in bumphunter version 1.11.3 as reported at > https://github.com/ririzarr/bumphunter/issues/7 with the proposed fix > at > https://github.com/lcolladotor/bumphunter/commit/4093a628ecd81ace3a26511b82d2c3ca47849d33 > However the bumphunter GitHub repository is outdated versus the > version available in Bioc-devel as I reported at > https://github.com/ririzarr/bumphunter/issues/9. I can recognize that > it stopped being in sync once the git-svn-bridge stopped working. > Which is why I'm sending here a SVN diff file with the patch that can > fix this small issue. > > The patch reads: > > > Index: DESCRIPTION > =================================================================== > --- DESCRIPTION (revision 115247) > +++ DESCRIPTION (working copy) > @@ -1,5 +1,5 @@ > Package: bumphunter > -Version: 1.11.3 > +Version: 1.11.4 > Title: Bump Hunter > Description: Tools for finding bumps in genomic data > Authors@R: c(person(c("Rafael", "A."), "Irizarry", role = c("cre","aut"), > email > Index: NAMESPACE > =================================================================== > --- NAMESPACE (revision 115247) > +++ NAMESPACE (working copy) > @@ -19,6 +19,7 @@ > importFrom(GenomicRanges, GRanges, makeGRangesFromDataFrame) > importMethodsFrom(GenomicRanges, sort) > importFrom(locfit, locfit) > +importFrom(locfit, lp) > importFrom(utils, data, packageDescription) > importFrom(parallel, mclapply, stopCluster) > importFrom(GenomicFeatures, exonsBy, cdsBy, transcriptsBy) > > > > > Best, > Leonardo > > Leonardo Collado Torres, PhD Candidate > Department of Biostatistics > Johns Hopkins University > Bloomberg School of Public Health > Website: http://lcolladotor.github.io/about.html > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
