Of course, that depends on whether Julie actually uses hash::values or this is just trying to avoid a conflict. Importing IRanges piecewise is ... probably difficult.
Best, Kasper On Thu, Mar 31, 2016 at 10:05 AM, Michael Lawrence < lawrence.mich...@gene.com> wrote: > We should probably deprecate values(). It has long been superseded by > mcols(). But for now, it would seem pragmatic to importFrom(hash, ...) > since it has so few functions. > > On Thu, Mar 31, 2016 at 6:54 AM, Zhu, Lihua (Julie) > <julie....@umassmed.edu> wrote: > > Sorry. I meant values. > > > > replacing previous import ŒIRanges::values¹ by Œhash::values¹ when > loading > > ŒCRISPRseek¹ > > > > Best, > > > > Julie > > > > > > On 3/30/16 11:13 PM, "Michael Lawrence" <lawrence.mich...@gene.com> > wrote: > > > >>I can't find the hash function in IRanges. Are you sure it has one? > >> > >>On Wed, Mar 30, 2016 at 8:07 PM, Zhu, Lihua (Julie) > >><julie....@umassmed.edu> wrote: > >>> Michael, > >>> > >>> I have the same user case as Kasper. Another example is that both > >>>IRanges > >>> and hash packages have hash. I need to use the hash from the hash > >>>package > >>> instead of the one from IRanges. > >>> > >>> Best, > >>> > >>> Julie > >>> > >>> On Mar 30, 2016, at 7:57 PM, Kasper Daniel Hansen > >>> <kasperdanielhan...@gmail.com> wrote: > >>> > >>> My usecase is when I import() two packages who has a conflict in a > name. > >>> For example, both Biobase and matrixStats has both anyMissing and > >>> rowMedians. I am happy to get all of these two packages, but I need to > >>> resolve the conflict. Since I want to keep the ones from matrixStats I > >>>know > >>> need to figure out how to import Biobase selectively. Which I can, > >>>using > >>> the tools from codetoolsBioC, but I would also be happy with an > >>> importFromExcept(), which would make my life much easier. > >>> > >>> Best, > >>> Kasper > >>> > >>> On Wed, Mar 30, 2016 at 4:47 PM, Michael Lawrence > >>> <lawrence.mich...@gene.com> wrote: > >>>> > >>>> I'm curious about which symbols you wouldn't want to import, and why. > >>>> > >>>> On Wed, Mar 30, 2016 at 12:19 PM, Zhu, Lihua (Julie) > >>>> <julie....@umassmed.edu> wrote: > >>>> > Hi, > >>>> > > >>>> > Is there a function to import all the exported objects from a > package > >>>> > except a few named ones in NAMESPACE file? > >>>> > > >>>> > For example, I would like to import all the functions in S4Vectors > >>>> > except fold. Is there a way to specify this without listing all > >>>>other > >>>> > functions using importFrom? > >>>> > > >>>> > Many thanks for your help! > >>>> > > >>>> > Best regards, > >>>> > > >>>> > Julie > >>>> > > >>>> > ******************************************** > >>>> > Lihua Julie Zhu, Ph.D > >>>> > Research Professor > >>>> > Department of Molecular, Cell and Cancer Biology (MCCB) > >>>> > Head of MCCB Bioinformatics Core > >>>> > Program in Molecular Medicine > >>>> > Program in Bioinformatics and Integrative Biology > >>>> > University of Massachusetts Medical School > >>>> > 364 Plantation Street, Room 613 > >>>> > Worcester, MA 01605 > >>>> > 508-856-5256 phone > >>>> > (508) 856 5460 fax > >>>> > > >>>> > > >>>> > http://profiles.umassmed.edu/profiles/ProfileDetails.aspx?From=SE&Person > >>>>=1134 > >>>> > > >>>> > > >>>> > [[alternative HTML version deleted]] > >>>> > > >>>> > _______________________________________________ > >>>> > Bioc-devel@r-project.org mailing list > >>>> > > >>>> > https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailma > > >>>>n_listinfo_bioc-2Ddevel&d=BQIBaQ&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4Der > > >>>>PlOmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU&m=K-j995DBKSpPEMWrL > > >>>>Wklcv4lQEiFC7wPFwn1ssv9dtg&s=fijAc5Y3bbV4ei4vYEx_SXy9kDcQ8vNUPOrE0cq1eZk > >>>>&e= > >>>> > >>>> _______________________________________________ > >>>> Bioc-devel@r-project.org mailing list > >>>> > >>>> > https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailma > > >>>>n_listinfo_bioc-2Ddevel&d=BQIBaQ&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4Der > > >>>>PlOmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU&m=K-j995DBKSpPEMWrL > > >>>>Wklcv4lQEiFC7wPFwn1ssv9dtg&s=fijAc5Y3bbV4ei4vYEx_SXy9kDcQ8vNUPOrE0cq1eZk > >>>>&e= > >>> > >>> > > > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel