But using hash::values() is not so bad. On Thu, Mar 31, 2016 at 7:09 AM, Kasper Daniel Hansen <kasperdanielhan...@gmail.com> wrote: > Of course, that depends on whether Julie actually uses hash::values or this > is just trying to avoid a conflict. Importing IRanges piecewise is ... > probably difficult. > > Best, > Kasper > > On Thu, Mar 31, 2016 at 10:05 AM, Michael Lawrence > <lawrence.mich...@gene.com> wrote: >> >> We should probably deprecate values(). It has long been superseded by >> mcols(). But for now, it would seem pragmatic to importFrom(hash, ...) >> since it has so few functions. >> >> On Thu, Mar 31, 2016 at 6:54 AM, Zhu, Lihua (Julie) >> <julie....@umassmed.edu> wrote: >> > Sorry. I meant values. >> > >> > replacing previous import ŒIRanges::values¹ by Œhash::values¹ when >> > loading >> > ŒCRISPRseek¹ >> > >> > Best, >> > >> > Julie >> > >> > >> > On 3/30/16 11:13 PM, "Michael Lawrence" <lawrence.mich...@gene.com> >> > wrote: >> > >> >>I can't find the hash function in IRanges. Are you sure it has one? >> >> >> >>On Wed, Mar 30, 2016 at 8:07 PM, Zhu, Lihua (Julie) >> >><julie....@umassmed.edu> wrote: >> >>> Michael, >> >>> >> >>> I have the same user case as Kasper. Another example is that both >> >>>IRanges >> >>> and hash packages have hash. I need to use the hash from the hash >> >>>package >> >>> instead of the one from IRanges. >> >>> >> >>> Best, >> >>> >> >>> Julie >> >>> >> >>> On Mar 30, 2016, at 7:57 PM, Kasper Daniel Hansen >> >>> <kasperdanielhan...@gmail.com> wrote: >> >>> >> >>> My usecase is when I import() two packages who has a conflict in a >> >>> name. >> >>> For example, both Biobase and matrixStats has both anyMissing and >> >>> rowMedians. I am happy to get all of these two packages, but I need to >> >>> resolve the conflict. Since I want to keep the ones from matrixStats >> >>> I >> >>>know >> >>> need to figure out how to import Biobase selectively. Which I can, >> >>>using >> >>> the tools from codetoolsBioC, but I would also be happy with an >> >>> importFromExcept(), which would make my life much easier. >> >>> >> >>> Best, >> >>> Kasper >> >>> >> >>> On Wed, Mar 30, 2016 at 4:47 PM, Michael Lawrence >> >>> <lawrence.mich...@gene.com> wrote: >> >>>> >> >>>> I'm curious about which symbols you wouldn't want to import, and why. >> >>>> >> >>>> On Wed, Mar 30, 2016 at 12:19 PM, Zhu, Lihua (Julie) >> >>>> <julie....@umassmed.edu> wrote: >> >>>> > Hi, >> >>>> > >> >>>> > Is there a function to import all the exported objects from a >> >>>> > package >> >>>> > except a few named ones in NAMESPACE file? >> >>>> > >> >>>> > For example, I would like to import all the functions in S4Vectors >> >>>> > except fold. Is there a way to specify this without listing all >> >>>>other >> >>>> > functions using importFrom? >> >>>> > >> >>>> > Many thanks for your help! >> >>>> > >> >>>> > Best regards, >> >>>> > >> >>>> > Julie >> >>>> > >> >>>> > ******************************************** >> >>>> > Lihua Julie Zhu, Ph.D >> >>>> > Research Professor >> >>>> > Department of Molecular, Cell and Cancer Biology (MCCB) >> >>>> > Head of MCCB Bioinformatics Core >> >>>> > Program in Molecular Medicine >> >>>> > Program in Bioinformatics and Integrative Biology >> >>>> > University of Massachusetts Medical School >> >>>> > 364 Plantation Street, Room 613 >> >>>> > Worcester, MA 01605 >> >>>> > 508-856-5256 phone >> >>>> > (508) 856 5460 fax >> >>>> > >> >>>> > >> >> >>>> >>>>http://profiles.umassmed.edu/profiles/ProfileDetails.aspx?From=SE&Person >> >>>>=1134 >> >>>> > >> >>>> > >> >>>> > [[alternative HTML version deleted]] >> >>>> > >> >>>> > _______________________________________________ >> >>>> > Bioc-devel@r-project.org mailing list >> >>>> > >> >> >>>> >>>>https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailma >> >> >>>> >>>>n_listinfo_bioc-2Ddevel&d=BQIBaQ&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4Der >> >> >>>> >>>>PlOmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU&m=K-j995DBKSpPEMWrL >> >> >>>> >>>>Wklcv4lQEiFC7wPFwn1ssv9dtg&s=fijAc5Y3bbV4ei4vYEx_SXy9kDcQ8vNUPOrE0cq1eZk >> >>>>&e= >> >>>> >> >>>> _______________________________________________ >> >>>> Bioc-devel@r-project.org mailing list >> >>>> >> >> >>>> >>>>https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailma >> >> >>>> >>>>n_listinfo_bioc-2Ddevel&d=BQIBaQ&c=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4Der >> >> >>>> >>>>PlOmhQ&r=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU&m=K-j995DBKSpPEMWrL >> >> >>>> >>>>Wklcv4lQEiFC7wPFwn1ssv9dtg&s=fijAc5Y3bbV4ei4vYEx_SXy9kDcQ8vNUPOrE0cq1eZk >> >>>>&e= >> >>> >> >>> >> > > >
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