Dear all,
I was wondering, you think it would be possible to make the transcriptLength
function in GenomicFeatures a method and export that? Reason is that I have
also implemented a transcriptLength function (actually presently a method in
order to allow that to be used for EnsDb and TxDb objects), but this causes the
warning
The following object is masked from 'package:GenomicFeatures':
transcriptLengths
on package loading.
Just in case, that’s the code from my package:
if(!isGeneric("transcriptLengths"))
setGeneric("transcriptLengths", function(x, with.cds_len=FALSE,
with.utr5_len=FALSE,
with.utr3_len=FALSE, ...)
standardGeneric("transcriptLengths”))
setMethod("transcriptLengths", "EnsDb", function(x, with.cds_len=FALSE,
with.utr5_len=FALSE,
with.utr3_len=FALSE,
filter=list()){
return(.transcriptLengths(x, with.cds_len=with.cds_len,
with.utr5_len=with.utr3_len,
with.utr3_len=with.utr3_len, filter=filter))
})
cheers, jo
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