Dear Bioc-devel list people, I am baffled about this 1 WARNING when I run “R CMD check ASAFE_0.99.0.tar.gz” and would be grateful if anyone could help me get rid of it.
Excerpt from attached log file: "* checking re-building of vignette outputs ... WARNING Error in re-building vignettes: ... Warning in file(file, ifelse(append, "a", "w")) : cannot open file 'ASAFE.R': Permission denied Quitting from lines 163-172 (ASAFE.Rmd) Error: processing vignette 'ASAFE.Rmd' failed with diagnostics: cannot open the connection Execution halted” I don’t have a file called ASAFE.R. I looked at lines 163-172 of ASAFE.Rmd. Here are lines 162-172 in vim: 162 ```{r} 163 164 # Making the rsID column row names 165 166 row.names(adm_ancestries) <- adm_ancestries[,1] 167 row.names(adm_genotypes) <- adm_genotypes[,1] 168 169 adm_ancestries <- adm_ancestries[,-1] 170 adm_genotypes <- adm_genotypes[,-1] 171 172 ``` I think adm_ancestries and adm_genotypes are successfully exported data objects because they are used earlier in the vignette and no warning occurred then. Hence, I don’t see why I’m getting a warning from these lines. The tar.gz file can be found here: https://github.com/BiostatQian/ASAFE/raw/master/ASAFE_0.99.0.tar.gz Thanks, Qian _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel