Thanks Dan! I did came across a similar post a few years ago regarding its non-reproducibility http://r.789695.n4.nabble.com/quot-Failed-to-locate-the-texi2pdf-output-file-quot-td4664111.html
In this case, is it possible not to show build error on the main page of the package http://bioconductor.org/packages/release/bioc/html/GUIDEseq.html? I am afraid that reviewers will most likely think that the software is not working. Best, Julie From: Dan Tenenbaum <dtene...@fredhutch.org<mailto:dtene...@fredhutch.org>> Date: Thursday, July 7, 2016 3:15 PM To: Jianhong Ou <jianhong...@umassmed.edu<mailto:jianhong...@umassmed.edu>>, Lihua Julie Zhu <julie....@umassmed.edu<mailto:julie....@umassmed.edu>>, "bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>" <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> Subject: Re: [Bioc-devel] build error only occurs in window system Don't bother. The issue is a long-standing one and very difficult to reproduce which is why it has not been fixed. It happens sporadically so the solution is to wait for the next day's build and it will clear itself up. Dan On July 7, 2016 11:05:22 AM PDT, "Ou, Jianhong" <jianhong...@umassmed.edu<mailto:jianhong...@umassmed.edu>> wrote: Hi Julie, You could try to install windows 10 in a virtualBox for debugging. virtualBox: https://www.virtualbox.org/wiki/Downloads Windows 10: https://www.microsoft.com/en-us/software-download/windows10/ Yours Sincerely, Jianhong Ou TEL: 508-856-5379 LRB 608 Bioinformatician of Bioinformatics core at Department of Molecular, Cell and Cancer Biology UMASS Medical School 364 Plantation Street Worcester, MA 01605 Confidentiality Notice: This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential, proprietary and privileged information. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender immediately and destroy or permanently delete all copies of the original message. On 7/7/16 1:15 PM, "Bioc-devel on behalf of Zhu, Lihua (Julie)" <bioc-devel-boun...@r-project.org<mailto:bioc-devel-boun...@r-project.org> on behalf of julie....@umassmed.edu<mailto:julie....@umassmed.edu>> wrote: Dan, I recently noticed that GUIDEseq page has a error build status at http://bioconductor.org/packages/release/bioc/html/GUIDEseq.html. Oddly, the error only occurs in the window server. Is this something related to the window server solvable by the core team, or should I change something to make it work? I am preparing a manuscript. It would not look good if the reviewers see a red error status on the page. Could you please help me? Many thanks! Best regards, Julie running command '"C:\Users\BIOCBU�1\AppData\Local\Programs\MIKTEX�1.9\miktex\bin\texify.ex e" --quiet --pdf "GUIDEseq.tex" --max-iterations=20 -I "E:/biocbld/bbs-3.3-bioc/R/share/texmf/tex/latex" -I "E:/biocbld/bbs-3.3-bioc/R/share/texmf/bibtex/bst"' had status 1 Error in find_vignette_product(name, by = "texi2pdf", engine = engine) : Failed to locate the 'texi2pdf' output file (by engine 'utils::Sweave') for vignette with name 'GUIDEseq'. The following files exist in directory '.': 'GUIDEseq-concordance.tex', 'GUIDEseq.Rnw', 'GUIDEseq.tex', 'gRNA-PlusMinusPeaksMerged.bed', 'gRNA-PlusMinusPeaksMerged.xls', 'gRNA-peaks.xls', 'gRNAHEK293_site4_chr13.bamReadSummary.xls', 'mergedPeaks.bed', 'offTargetsInPeakRegions.xls' Calls: <Anonymous> -> find_vignette_product Execution halted Confidentiality Notice:\ This e-mail message, including ...{{dropped:11}} ________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
