Dear Bioconductor Developers,
I recently contributed a package `normR` for calling enrichment and
differences in ChIP-seq data (http://bioconductor.org/packages/normr/).
To test the functionality of the package, I used `testthat`. All the
tests run well when using `testthat::test()`, `R CMD build` or `R CMD
check`. However, the `normr` package landing package
(http://bioconductor.org/packages/normr/) reports "Test coverage: unknown".
I installed `covr` on my local machine and ran
`covr::package_coverage()`. It seems to work fine:
> normr Coverage: 77.50%
> R/NormRCountConfig.R: 50.00%
> R/methods.R: 64.32%
> src/em.cpp: 79.27%
> R/NormRFit.R: 87.33%
> src/normr_init.c: 100.00%
Is "Test Coverage: unknown" related to the Bioconductor build system not
being able to build my package on Linux? (I filed this in an earlier
post related to the unavailability of automake-1.14 for Rhtslib 1.5.3
installation)
Thank you very much,
Johannes Helmuth
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