Dear Yasir Did you actually upload the source code of these new function to the subversion server? I get, right now
huber@boltzmann:~/madman/Rpacks/GSAR/R$ svn info . … URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GSAR/R Revision: 119920 … "grep AggrF *” in that directory does not yield any results. "grep radial *” finds radial_ranking but not radial.ranking etc. Wolfgang > On Aug 6, 2016, at 0:34 GMT+2, Rahmatallah, Yasir <yrahmatal...@uams.edu> > wrote: > > Hi, > > I recently added 6 more functions to package GSAR. I added the R files and > manual pages for the new functions. I updated the namespace file accordingly. > I can build the package successfully on my windows PC and 'R CMD check' > returns no errors or warnings. I can install the package and it works fine on > my PC. I use svn to update the development version (current development > version is 1.7.2). The last update returned the following error > > ** testing if installed package can be loaded > Error in namespaceExport(ns, exports) : > undefined exports: AggrFtest, radial.ranking, MDtest, RMDtest, findMST2.PPI, > TestGeneSets > Error: loading failed > > The undefined exports are the 6 new functions I added to the package. It's > like they are declared in the namespace file but they don't exist elsewhere. > Any idea what causes this error? Help is appreciated. The contents of the > namespace file are shown below: > > export( > AggrFtest, > HDP.ranking, > radial.ranking, > WWtest, > KStest, > MDtest, > RKStest, > RMDtest, > GSNCAtest, > findMST2, > findMST2.PPI, > plotMST2.pathway, > TestGeneSets > ) > > import(igraph) > importFrom("stats", "cor", "dist", "sd", "var.test", "p.adjust") > importFrom("graphics", "legend", "mtext", "par", "plot", "title") > > Thank you, > Yasir > > ---------------------------------------------------------------------- > Confidentiality Notice: This e-mail message, including a...{{dropped:10}} > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel Wolfgang Wolfgang Huber Principal Investigator, EMBL Senior Scientist Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg, Germany wolfgang.hu...@embl.de http://www.huber.embl.de _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
