Hi Hervé, Thank you so much for help. My package uses JAGS thru the rjags package.
Thanks, Yu On Fri, Sep 23, 2016 at 2:59 AM, Hervé Pagès <hpa...@fredhutch.org> wrote: > Hi Yu, > > On 09/22/2016 02:15 PM, Yu Kong wrote: > >> Dear BioConductor community, >> >> My package (MADSEQ) passed the build on Linux (*malbec1*) and Mac >> (*morelia*) >> build servers. However it fails on Windows (tokay1) server for multiple >> days. Our package is a Bayesian model depends on JAGS sampler. The error >> message said >> >> "error: Failed to locate any version of JAGS version 4 >> The rjags package is just an interface to the JAGS library >> Make sure you have installed JAGS-4.x.y.exe (for any x >=0, y>=0) from >> http://www.sourceforge.net/projects/mcmc-jags/files"; >> >> Any help or suggestions would be really appreciated! >> > > I will install JAGS on tokay1 today after the builds finish. > > Just to clarify: your package depends on CRAN package rjags, which > requires JAGS. But does your package *directly* depend on JAGS i.e. > does it make calls to JAGS directly? Or does it use JAGS only thru > the rjags package? The difference is subtle but important. If the > latter, then you shouldn't have > > SystemRequirements: JAGS(>=4.2.0)http://mcmc-jags.sourceforge.net/ > > in your DESCRIPTION file. It's the responsibility of the rjags package > to specify this system requirement, which it does with the following > line: > > SystemRequirements: JAGS 4.x.y > > Cheers, > H. > > >> Thanks, >> Yu >> >> http://bioconductor.org/checkResults/devel/bioc-LATEST/ >> MADSEQ/tokay1-buildsrc.html >> http://bioconductor.org/packages/3.4/bioc/html/MADSEQ.html >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >> > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
