Hi All, I just checked on the status of philr build/check report. It had been clear as of 2 weeks ago but when I just checked it appears to be failing to build on all platforms. (included built report from malbec1 below). I tried R CMD check and BiocCheck on my local machine without issues. I notice that ggtree is also having some issues (which I make use of in philr), perhaps this is what is causing philr to fail? Do I need to do anything?
Any help or advice appreciated, Justin Silverman ############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data philr ### ############################################################################## ############################################################################## * checking for file ‘philr/DESCRIPTION’ ... OK * preparing ‘philr’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Loading required package: Matrix Loading required package: foreach Loaded glmnet 2.0-5 If you use ggtree in published research, please cite: Guangchuang Yu, David Smith, Huachen Zhu, Yi Guan, Tommy Tsan-Yuk Lam. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution 2016, doi:10.1111/2041-210X.12628 Attaching package: 'ggtree' The following object is masked from 'package:Matrix': expand The following object is masked from 'package:ape': rotate Attaching package: 'dplyr' The following object is masked from 'package:ggtree': collapse The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Found more than one class "phylo" in cache; using the first, from namespace 'ggtree' Quitting from lines 218-230 (philr-intro.Rmd) Error: processing vignette 'philr-intro.Rmd' failed with diagnostics: unused argument (check.aes = FALSE) Execution halted [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel