Dear T.Wang. First of all, as a general rule, please include the sessionInfo() output and command that caused the error to facilitate useful replies. Here I will assume that you are using the devel branch of BioC on the latest R/BioC setup available.
As far as I know, your problem is still a consequence of the recent release, affecting all packages dependencies which have not passed a single R CMD check on the new devel branch (the issue has been reported on this mailing list for a few packages already; e.g. Biobase, now resolved). the situation should resolve after all relevant packages pass at least one build cycle without error: - For the lumi package, you can see the R CMD check failing in all platforms build report: http://bioconductor.org/checkResults/devel/bioc- LATEST/lumi/ - Note that this is also the case for the release branch http://bioconductor.org/checkResults/3.4/bioc-LATEST/lumi/ - As a result, the package was not released yet on the devel branch of the repository, and the landing page of the lumi package is not available yet either (click the lumi link in the build report above, which will take you to http://bioconductor.org/packages/3.5/bioc/html/lumi.html). - Another artifact of this situation is that the landing page of the release branch still claims to be the devel branch http://bioconductor.org/packages/3.4/bioc/html/lumi.html Solution (as far as I know): - Simply wait that the package (and its dependencies) passes R CMD check on all platforms, which will then trigger its release on the BioC repository. - In other circumstances, I would have suggested to install the lumi package from the release branch in the meantime, but given the build errors there as well, you might have to download older sources of the package, and install them using "install.packages(..., repos = NULL)" rather than "biocLite(...)" Last but not least, I will also point out that a quick check of the Bioconductor Git Mirror suggests that the latest BioC release where the lumi package code was updated is release-3.1 ( https://github.com/Bioconductor-mirror/lumi/tree/release-3.1). Maybe some code updates are overdue now for package to build succesfully. Kind regads, Kevin On Fri, Oct 28, 2016 at 9:20 AM, 王棣台 <r04945...@ntu.edu.tw> wrote: > Hi, all > > I am the author of package "anamiR". > I got a Warning message "Warning: dependency ''lumi" is not available" > when I installed anamiR. > Also, I tried other packages which depend on "lumi" package, and all got > the same warning message. > Is there any way I can solve this problem? > > Best regards, > T.Wang > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel