Thank you both. Could you also advice me on the error I'm receiving on oaxaca? "there is no package called 'webshot'" New build report: http://bioconductor.org/spb_reports/chimeraviz_ buildreport_20161207152203.html
On Wed, Dec 7, 2016 at 7:42 PM, Hervé Pagès <hpa...@fredhutch.org> wrote: > Hi Stian, > > The build machines used by the SPB are the same as the machines used > for the daily builds and they already have the latest BiocStyle > installed (BiocStyle 2.3.23). You can see this by going on the daily > build report for devel and clicking on any of the link in the > "Installed pkgs" column in the top table: > > https://bioconductor.org/checkResults/3.5/bioc-LATEST/ > > However, the SPB report for your package is from Nov 30 so it could > be that it predates the fix in BiocStyle. You can trigger a new build > of your package by just bumping its version on github. > > Hope this helps, > H. > > > On 12/07/2016 07:17 AM, Leonardo Collado Torres wrote: > >> Hi Stian, >> >> Install BiocStyle 2.3.20 or newer and that error will go away. See >> https://github.com/Bioconductor/BiocStyle/issues/20 for details. >> >> Best, >> Leo >> >> On Wed, Dec 7, 2016 at 7:44 AM, Stian Lågstad <stianlags...@gmail.com> >> wrote: >> >>> Hi, >>> >>> Could someone please advice me on the errors I'm getting building my >>> package? I'm unable to reproduce them locally. >>> >>> Link to build report: >>> http://bioconductor.org/spb_reports/chimeraviz_buildreport_ >>> 20161130173413.html >>> Link to bioconductor submission issue: >>> https://github.com/Bioconductor/Contributions/issues/206 >>> >>> I'm getting an error on creating my vignette: `argumemt is not a >>> character >>> vector` >>> I also get this: `there is no package called 'webshot'` >>> >>> I believe these could be related to this warning: `Warning in >>> engine$weave(file, quiet = quiet, encoding = enc) : Pandoc (>= 1.12.3) >>> and/or pandoc-citeproc not available. Falling back to R Markdown v1.` >>> >>> I use rmarkdown_1.2 locally without problems. Can someone here assist me? >>> >>> Thank you. >>> >>> -- >>> Stian Lågstad >>> +47 41 80 80 25 >>> >>> [[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> Bioc-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>> >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >> > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > -- Stian Lågstad +47 41 80 80 25 [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
