hi, After checking out the data_store version, I get an svn error "access forbidden". Can you remind me the proper steps (I tried to following variations on the Source Code instructions for experiment packages)?
love:test/ $ svn co https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/data_store/tximportData A tximportData/inst A tximportData/inst/extdata A tximportData/inst/extdata/cufflinks A tximportData/inst/extdata/cufflinks/isoforms.count_table A tximportData/inst/extdata/cufflinks/isoforms.attr_table A tximportData/inst/extdata/cufflinks/isoforms.fpkm_table A tximportData/inst/extdata/rsem A tximportData/inst/extdata/rsem/ERR188329 A tximportData/inst/extdata/rsem/ERR188329/ERR188329.genes.results A tximportData/inst/extdata/rsem/ERR188356 A tximportData/inst/extdata/rsem/ERR188356/ERR188356.genes.results A tximportData/inst/extdata/rsem/ERR188088 A tximportData/inst/extdata/rsem/ERR188088/ERR188088.genes.results A tximportData/inst/extdata/rsem/ERR188288 A tximportData/inst/extdata/rsem/ERR188288/ERR188288.genes.results A tximportData/inst/extdata/rsem/ERR188297 A tximportData/inst/extdata/rsem/ERR188297/ERR188297.genes.results A tximportData/inst/extdata/rsem/ERR188021 A tximportData/inst/extdata/rsem/ERR188021/ERR188021.genes.results A tximportData/inst/extdata/tx2gene.csv A tximportData/inst/extdata/salmon A tximportData/inst/extdata/salmon/ERR188329 A tximportData/inst/extdata/salmon/ERR188329/cmd_info.json A tximportData/inst/extdata/salmon/ERR188329/quant.sf A tximportData/inst/extdata/salmon/ERR188356 A tximportData/inst/extdata/salmon/ERR188356/quant.sf A tximportData/inst/extdata/salmon/ERR188356/cmd_info.json A tximportData/inst/extdata/salmon/ERR188088 A tximportData/inst/extdata/salmon/ERR188088/quant.sf A tximportData/inst/extdata/salmon/ERR188088/cmd_info.json A tximportData/inst/extdata/salmon/ERR188288 A tximportData/inst/extdata/salmon/ERR188288/quant.sf A tximportData/inst/extdata/salmon/ERR188288/cmd_info.json A tximportData/inst/extdata/salmon/ERR188297 A tximportData/inst/extdata/salmon/ERR188297/cmd_info.json A tximportData/inst/extdata/salmon/ERR188297/quant.sf A tximportData/inst/extdata/salmon/ERR188021 A tximportData/inst/extdata/salmon/ERR188021/cmd_info.json A tximportData/inst/extdata/salmon/ERR188021/quant.sf A tximportData/inst/extdata/kallisto A tximportData/inst/extdata/kallisto/ERR188329 A tximportData/inst/extdata/kallisto/ERR188329/run_info.json A tximportData/inst/extdata/kallisto/ERR188329/abundance.tsv A tximportData/inst/extdata/kallisto/ERR188356 A tximportData/inst/extdata/kallisto/ERR188356/run_info.json A tximportData/inst/extdata/kallisto/ERR188356/abundance.tsv A tximportData/inst/extdata/kallisto/ERR188088 A tximportData/inst/extdata/kallisto/ERR188088/run_info.json A tximportData/inst/extdata/kallisto/ERR188088/abundance.tsv A tximportData/inst/extdata/kallisto/ERR188288 A tximportData/inst/extdata/kallisto/ERR188288/abundance.tsv A tximportData/inst/extdata/kallisto/ERR188288/run_info.json A tximportData/inst/extdata/kallisto/ERR188297 A tximportData/inst/extdata/kallisto/ERR188297/run_info.json A tximportData/inst/extdata/kallisto/ERR188297/abundance.tsv A tximportData/inst/extdata/kallisto/ERR188021 A tximportData/inst/extdata/kallisto/ERR188021/run_info.json A tximportData/inst/extdata/kallisto/ERR188021/abundance.tsv A tximportData/inst/extdata/sailfish A tximportData/inst/extdata/sailfish/ERR188329 A tximportData/inst/extdata/sailfish/ERR188329/cmd_info.json A tximportData/inst/extdata/sailfish/ERR188329/quant.sf A tximportData/inst/extdata/sailfish/ERR188356 A tximportData/inst/extdata/sailfish/ERR188356/quant.sf A tximportData/inst/extdata/sailfish/ERR188356/cmd_info.json A tximportData/inst/extdata/sailfish/ERR188088 A tximportData/inst/extdata/sailfish/ERR188088/cmd_info.json A tximportData/inst/extdata/sailfish/ERR188088/quant.sf A tximportData/inst/extdata/sailfish/ERR188288 A tximportData/inst/extdata/sailfish/ERR188288/quant.sf A tximportData/inst/extdata/sailfish/ERR188288/cmd_info.json A tximportData/inst/extdata/sailfish/ERR188297 A tximportData/inst/extdata/sailfish/ERR188297/quant.sf A tximportData/inst/extdata/sailfish/ERR188297/cmd_info.json A tximportData/inst/extdata/sailfish/ERR188021 A tximportData/inst/extdata/sailfish/ERR188021/quant.sf A tximportData/inst/extdata/sailfish/ERR188021/cmd_info.json A tximportData/inst/extdata/samples.txt A tximportData/inst/extdata/samples_extended.txt Checked out revision 4006. love:tximportData/ $ cd inst/extdata [15:06:02] Then I add new files: love:extdata/ $ svn add kallisto_h5 [15:06:19] A kallisto_h5 A kallisto_h5/ERR188329 A kallisto_h5/ERR188329/run_info.json A (bin) kallisto_h5/ERR188329/abundance.h5 A kallisto_h5/ERR188356 A kallisto_h5/ERR188356/run_info.json A (bin) kallisto_h5/ERR188356/abundance.h5 A kallisto_h5/ERR188088 A kallisto_h5/ERR188088/run_info.json A (bin) kallisto_h5/ERR188088/abundance.h5 A kallisto_h5/ERR188288 A kallisto_h5/ERR188288/run_info.json A (bin) kallisto_h5/ERR188288/abundance.h5 A kallisto_h5/ERR188297 A (bin) kallisto_h5/ERR188297/abundance.h5 A kallisto_h5/ERR188297/run_info.json A kallisto_h5/ERR188021 A kallisto_h5/ERR188021/run_info.json A (bin) kallisto_h5/ERR188021/abundance.h5 love:extdata/ $ svn commit -m "add kallisto HDF5 files" [15:06:27] Adding kallisto_h5 svn: E195023: Commit failed (details follow): svn: E195023: Changing directory '/Users/love/bioc/test/tximportData/inst/extdata/kallisto_h5' is forbidden by the server svn: E175013: Access to '/bioc-data/!svn/txr/4006-1/trunk/experiment/data_store/tximportData/inst/extdata/kallisto_h5' forbidden _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel