On Sun, Jan 29, 2017 at 11:36 PM, Martin Morgan
<martin.mor...@roswellpark.org> wrote:
>
>
> can you try to find out what file it is trying to read and what function
> call, e.g.,
>
> options(error=recover)
> biocLite("lazyeval")
>
> That should get the call stack; choose readRDS and look for the 'file'
> variable for the exact file.
>
> Martin
It is:
/var/folders/6n/cj15_ryn3ls0jtvfhtxztq080000gn/T//Rtmpvc0v9g/repos_https%3A%2F%2Fcran.rstudio.com%2Fbin%2Fmacosx%2Fmavericks%2Fcontrib%2F3.4.rds
Lewis-MacBook-Air:~ lw391$ ls -l
/var/folders/6n/cj15_ryn3ls0jtvfhtxztq080000gn/T//Rtmpvc0v9g/repos_https%3A%2F%2Fcran.rstudio.com%2Fbin%2Fmacosx%2Fmavericks%2Fcontrib%2F3.4.rds
-rw-r--r-- 1 lw391 staff 0 Jan 29 23:49
/var/folders/6n/cj15_ryn3ls0jtvfhtxztq080000gn/T//Rtmpvc0v9g/repos_https%3A%2F%2Fcran.rstudio.com%2Fbin%2Fmacosx%2Fmavericks%2Fcontrib%2F3.4.rds
I removed this file, then I could call biocLite once, but the second
time got the same error and the same file:
/var/folders/6n/cj15_ryn3ls0jtvfhtxztq080000gn/T//Rtmpvc0v9g/repos_https%3A%2F%2Fcran.rstudio.com%2Fbin%2Fmacosx%2Fmavericks%2Fcontrib%2F3.4.rds
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