Hi Raymond,
This should be fixed now in GenomeInfoDb 1.10.3 (release) and 1.11.8
(devel). Both packages should become available via biocLite() in the
next 24 hours or so.
Thanks again for reporting the issue and for your patience.
Cheers,
H.
On 02/01/2017 12:32 PM, Hervé Pagès wrote:
Hi Raymond,
On 02/01/2017 04:39 AM, Raymond Cavalcante wrote:
Hello,
I was wondering if any progress has been made on fixing this? I looked
through recent commits for GenomeInfoDb, but there didn't seem to be
anything related to this problem.
Not yet. Please expect a couple more days before this is resolved.
Thanks for your patience,
H.
Thanks,
Raymond
On Jan 25, 2017, at 23:01, Obenchain, Valerie
<valerie.obench...@roswellpark.org> wrote:
Thanks for the report. It looks like the directory structure has
changed. I'll work on this tomorrow and will post back when it's fixed.
Valerie
On 01/25/2017 06:29 PM, Raymond Cavalcante wrote:
Hello,
I'm suddenly encountering errors with GenomeInfoDb::Seqinfo():
GenomeInfoDb::Seqinfo(genome='hg19')
Error in file(file, "rt") : cannot open connection
In addition: Warning message:
In file(file, "rt") :
URL
'https://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/All/GCF_000001405.13.assembly.txt':
status was '404 Not Found'
I'm not sure how to fix this issue, as it seems to be more of an
NCBI problem. Any help would be greatly appreciated.
Thanks,
Raymond Cavalcante
_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
This email message may contain legally privileged and/or confidential
information. If you are not the intended recipient(s), or the
employee or agent responsible for the delivery of this message to the
intended recipient(s), you are hereby notified that any disclosure,
copying, distribution, or use of this email message is prohibited.
If you have received this message in error, please notify the sender
immediately by e-mail and delete this email message from your
computer. Thank you.
_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
--
Hervé Pagès
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024
E-mail: hpa...@fredhutch.org
Phone: (206) 667-5791
Fax: (206) 667-1319
_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
