Hi,
I just noticed that my packages MetaboSignal and MWASTools have a build report
with error for Windows in the devel branch. I wonder if there is something I
can do about this. See the specific error messages below:
-For MetaboSignal it says:
##
### Running command:
###
### chmod a+r MetaboSignal -R && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe
CMD build --keep-empty-dirs --no-resave-data MetaboSignal
###
##############################################################################
##############################################################################
* checking for file 'MetaboSignal/DESCRIPTION' ... OK
* preparing 'MetaboSignal':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
Warning: running command '"C:/Users/biocbuild/bbs-3.5-bioc/R/bin/x64/Rcmd.exe"
INSTALL -l
"C:\Users\biocbuild\bbs-3.5-bioc\tmpdir\RtmpUdQmpF\Rinst2180771a78c0"
--no-multiarch
"C:/Users/biocbuild/bbs-3.5-bioc/tmpdir/RtmpUdQmpF/Rbuild218072f9557/MetaboSignal"'
had status 1
-----------------------------------
* installing *source* package 'MetaboSignal' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called 'Biobase'
ERROR: lazy loading failed for package 'MetaboSignal'
* removing
'C:/Users/biocbuild/bbs-3.5-bioc/tmpdir/RtmpUdQmpF/Rinst2180771a78c0/MetaboSignal'
-----------------------------------
ERROR: package installation failed
-For MWASTools it says:
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf MWASTools.buildbin-libdir && mkdir MWASTools.buildbin-libdir &&
C:\cygwin\bin\curl.exe -O
http://172.29.0.4/BBS/3.5/bioc/src/contrib/MWASTools_0.99.18.tar.gz &&
C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build
--library=MWASTools.buildbin-libdir --merge-multiarch MWASTools_0.99.18.tar.gz
&& C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL
MWASTools_0.99.18.zip && rm MWASTools_0.99.18.tar.gz MWASTools_0.99.18.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1418k 100 1418k 0 0 52.5M 0 --:--:-- --:--:-- --:--:-- 55.4M
install for i386
* installing *source* package 'MWASTools' ...
** R
** data
*** moving datasets to lazyload DB
Warning: namespace 'SummarizedExperiment' is not available and has been replaced
by .GlobalEnv when processing object 'metabo_SE'
Warning: namespace 'SummarizedExperiment' is not available and has been replaced
by .GlobalEnv when processing object 'metabo_SE'
Warning: namespace 'SummarizedExperiment' is not available and has been replaced
by .GlobalEnv when processing object 'targetMetabo_SE'
Warning: namespace 'SummarizedExperiment' is not available and has been replaced
by .GlobalEnv when processing object 'targetMetabo_SE'
** inst
** preparing package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called 'S4Vectors'
ERROR: lazy loading failed for package 'MWASTools'
* removing
'C:/Users/biocbuild/bbs-3.5-bioc/meat/MWASTools.buildbin-libdir/MWASTools'
Warning: running command 'C:/Users/biocbuild/bbs-3.5-bioc/R/bin/i386/Rcmd.exe
INSTALL --library=MWASTools.buildbin-libdir MWASTools_0.99.18.tar.gz
--no-multiarch' had status 1
Thanks very much,
Andrea
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