but not GenomicFeatures, which is another victim of this
install.packages bug:
https://bioconductor.org/checkResults/3.5/bioc-LATEST/GenomicFeatures/tokay2-checksrc.html
AFAICS we've been seeing this problem on tokay2 (Windows) almost every
day for the last few weeks. I guess it started after we updated R to a
more recent R 3.4 on this machine. So I suspect a change in R somehow
triggered this.
H.
On 04/15/2017 08:02 PM, Obenchain, Valerie wrote:
EventPointer 0.99.36 built clean today:
https://urldefense.proofpoint.com/v2/url?u=http-3A__www.bioconductor.org_checkResults_devel_bioc-2DLATEST_&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=auvr-W1IWGGZ6bEm2_E4MMb1dYZxyOJiJEHxw8ffrPk&s=ZxAUJxS48UK2FAs1mcQeAC2XXy0-eiv9SW4OyyOUZDs&e=
Valerie
On 04/14/2017 09:16 AM, Obenchain, Valerie wrote:
Hi Juan Pablo,
We think this is a problem related to installed.packages(), see
discussion here:
https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_pipermail_bioc-2Ddevel_2017-2DApril_010819.html&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=auvr-W1IWGGZ6bEm2_E4MMb1dYZxyOJiJEHxw8ffrPk&s=bSGL5D0ea0jkhT_HDTBTWVccTXfXi-E7uYm4ZCy4VuY&e=
You can ignore this for now. Thanks for keeping an eye on the build report.
Valerie
On 04/14/2017 12:41 AM, Romero, Juan Pablo wrote:
Hello all,
I know that today is the deadline for passing R CMD build and R CMD check
without errors and warnings, and my package EventPointer has been working
perfectly for the last weeks.
Today the build report in tokay2 shows an error in one of the examples:
** running examples for arch 'x64' ... ERROR
Make the TxDb object ... Error in if (file.exists(dest) && file.mtime(dest) >
file.mtime(lib) && :
missing value where TRUE/FALSE needed
The error is coming from the function makeTxDbFromGFF and the error does not
come from functions from
my package.
Is anybody having a similar error?
I will appreciate any help on this to avoid problems related with adding the
package to the new release.
Thanks!
Best regards,
Juan Pablo
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