I find that my data file will not change after I did any commit. That might be the problem. Is there anything I forget to do?
Ti-Tai ________________________________________ ��: Hervé Pagès [hpa...@fredhutch.org] 寄件日期: 2017年4月21日 上午 06:00 至: 王棣台; bioc-devel@r-project.org 主旨: Re: [Bioc-devel] Object not found in vignette Also recently you bumped the version from 1.1.* to 1.2.* then went back to 1.1.* again. As a result the version that is available via biocLite() is 1.2.2, as reflected on the package landing page: https://bioconductor.org/packages/3.5/bioc/html/anamiR.html Any change you do to your package now won't propagate unless you bump the version to > 1.2.2. H. On 04/20/2017 02:52 PM, 王棣台 wrote: > it should be in my package since anamiR version 1.1.8 > That is weird. > > Ti-Tai > ________________________________________ > ��: Hervé Pagès [hpa...@fredhutch.org] > 寄件日期: 2017年4月21日 上午 05:49 > 至: 王棣台; bioc-devel@r-project.org > 主旨: Re: [Bioc-devel] Object not found in vignette > > On 04/20/2017 02:45 PM, Hervé Pagès wrote: >> On 04/20/2017 02:36 PM, 王棣台 wrote: >>> That missing object is a list format data generated by myself, >>> so I don't think it would be about Depends, Imports, or Suggests. >>> Except this one, other generated data can be found. >> >> And where did you put this data set so that data(table_pre) can >> find it? > > I mean the other generated data sets can be found because they are > in your package but I don't see the table_pre data set there. Did you forget > to commit it? > > H. > >> >> H. >> >>> >>> Ti-Tai >>> >>> ________________________________________ >>> ��: Hervé Pagès [hpa...@fredhutch.org] >>> 寄件日期: 2017年4月21日 上午 05:16 >>> 至: 王棣台; bioc-devel@r-project.org >>> 主旨: Re: [Bioc-devel] Object not found in vignette >>> >>> Why don't you give us the name of your package so we can look >>> at it? I suspect something is missing in your Depends, Imports, >>> or Suggests field. Works for you because you have the missing >>> package installed on your machine but not on the build machine >>> because the package is missing there. The build system (and your >>> users) doesn't have this package so the vignette fails there. >>> By adding the package to Depends, Imports, or Suggests, you let >>> the build system know that this package needs to be installed >>> before it tries to build the vignette. >>> >>> H. >>> >>> On 04/20/2017 01:51 PM, 王棣台 wrote: >>>> Hi all, >>>> >>>> I kept getting the same Error from BUILD REPORT: >>>> >>>> >>>> Error: processing vignette 'IntroductionToanamiR.Rmd' failed with >>>> diagnostics: >>>> object 'table_pre' not found >>>> >>>> However, I did confirm my package with R CMD BUILD and CHECK before >>>> committing, and there was no errors and warnings. >>>> >>>> I really don't know what is the problem. >>>> >>>> Does anyone have the same error before? >>>> >>>> Many Thanks, >>>> >>>> Ti-Tai Wang >>>> >>>> [[alternative HTML version deleted]] >>>> >>>> _______________________________________________ >>>> Bioc-devel@r-project.org mailing list >>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=TK-8woT9u1jslARFhHX9Y_pg-0Cg9S5vwIyvMX86pHU&s=3gO7lG40pXAtK-3RkKJ-yhJdwqUw-NZwBORf4PaN7xg&e= >>>> >>>> >>> >>> -- >>> Hervé Pagès >>> >>> Program in Computational Biology >>> Division of Public Health Sciences >>> Fred Hutchinson Cancer Research Center >>> 1100 Fairview Ave. N, M1-B514 >>> P.O. Box 19024 >>> Seattle, WA 98109-1024 >>> >>> E-mail: hpa...@fredhutch.org >>> Phone: (206) 667-5791 >>> Fax: (206) 667-1319 >>> >> > > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319
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