Hi, Ahh, ok. What I meant was that the "master" branch in Bioconductor-mirror is not up to date with bioc-devel. I could see that aCGH did have a release-3.5 branch, but that the "master" branch wasn't updated. You can see something similar for https://github.com/Bioconductor-mirror/derfinder/branches where https://github.com/Bioconductor-mirror/derfinder/blob/master/DESCRIPTION#L5 shows version 1.9.11 while bioc-devel's http://bioconductor.org/packages/devel/bioc/html/derfinder.html is at 1.11.0
Basically, the equivalent of older commits like https://github.com/Bioconductor-mirror/derfinder/commit/4687d52b8c6fda6541d2454bda1517ed2776d351 and https://github.com/Bioconductor-mirror/derfinder/commit/a0f94bae0270f390afc00468d953237f44722790 are missing. Best, Leo On Wed, May 3, 2017 at 1:54 PM, Rainer Johannes <johannes.rai...@eurac.edu> wrote: > > >> On 3 May 2017, at 19:51, Martin Morgan <martin.mor...@roswellpark.org> wrote: >> >> On 05/03/2017 01:10 PM, Leonardo Collado Torres wrote: >>> Hi, >>> >>> I don't think that any of the Bioconductor-mirror repos have been >>> updated to match the current bioc-devel branch. For example, look at >>> https://github.com/Bioconductor-mirror/aCGH/blob/master/DESCRIPTION#L4 >>> which is one of the first packages by alphabetical order. My guess is >>> that they are working on the svn to git transition plan described at >>> https://stat.ethz.ch/pipermail/bioc-devel/2017-March/010691.html. >> >> That's not correct, the repositories should be (in general) up to date. I >> believe Johannes' package is current (sorry, by the time I got to it it had >> healed itself and I didn't respond to the list). >> > > No prob. I've made an update to the package and after committing the change > to the Bioc svn ensembldb was synced successfully. > >> aCGH actually had a RELEASE_3_5 branch; I'll investigate why aCGH and at >> least some other packages have not been fully updated after the branch. >> >> Martin >> >> >>> >>> Best, >>> Leo >>> >>> On Thu, Apr 27, 2017 at 6:52 AM, Rainer Johannes >>> <johannes.rai...@eurac.edu> wrote: >>>> Hi, >>>> >>>> the github mirror for ensembldb seems to be out of sync with the BioC svn, >>>> i.e. the DESCRIPTION in >>>> https://github.com/Bioconductor-mirror/ensembldb/blob/master/DESCRIPTION >>>> is still at version 1.99.14 while in the svn it's already 2.1.0. >>>> >>>> First I thought the sync is not yet finished, but the release-3.5 was >>>> already created on the github mirror, so I guess sync must have been stuck >>>> somewhere. >>>> >>>> >>>> >>>> >>>> [[alternative HTML version deleted]] >>>> >>>> _______________________________________________ >>>> Bioc-devel@r-project.org mailing list >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>> >>> _______________________________________________ >>> Bioc-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>> >> >> >> This email message may contain legally privileged and/or confidential >> information. If you are not the intended recipient(s), or the employee or >> agent responsible for the delivery of this message to the intended >> recipient(s), you are hereby notified that any disclosure, copying, >> distribution, or use of this email message is prohibited. If you have >> received this message in error, please notify the sender immediately by >> e-mail and delete this email message from your computer. Thank you. > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
