Thanks Val! 2.9.4 isn't in bioc-devel yet, but I got it through Subversion and am up and running again.
On Sat, Jun 3, 2017 at 11:26 AM, Obenchain, Valerie < [email protected]> wrote: > Hi Levi, > > Lori fixed this bug last week. You'll need AnnotationHub >= 2.9.4. > > Val > > > On 06/03/2017 05:55 AM, Levi Waldron wrote: > > It works for me when I have an existing cache, but not after removing the > > cache: > > > >> unlink("~/.ExperimentHub", recursive=TRUE) > >> suppressPackageStartupMessages(library(curatedMetagenomicData)) > >> ExperimentHub() > > updating metadata: retrieving 1 resource > > > > |=========================================================== > ==============| > > 100% > > snapshotDate(): 2016-12-12 > > *Error in gzfile(file, "rb") : cannot open the connection* > > In addition: Warning message: > > In gzfile(file, "rb") : > > cannot open compressed file '/Users/lwaldron//. > ExperimentHub/index.rds', > > probable reason 'No such file or directory' > >> sessionInfo() > > R version 3.4.0 Patched (2017-06-02 r72758) > > Platform: x86_64-apple-darwin15.6.0 (64-bit) > > Running under: macOS Sierra 10.12.4 > > > > Matrix products: default > > BLAS: > > /System/Library/Frameworks/Accelerate.framework/Versions/ > A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib > > LAPACK: > > /Library/Frameworks/R.framework/Versions/3.4/ > Resources/lib/libRlapack.dylib > > > > locale: > > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > > > > attached base packages: > > [1] parallel stats graphics grDevices utils datasets methods > > base > > > > other attached packages: > > [1] ExperimentHub_1.3.0 AnnotationHub_2.9.3 BiocGenerics_0.23.0 > > > > loaded via a namespace (and not attached): > > [1] Rcpp_0.12.11 IRanges_2.11.3 > > [3] digest_0.6.12 mime_0.5 > > [5] R6_2.2.1 xtable_1.8-2 > > [7] DBI_0.6-1 stats4_3.4.0 > > [9] RSQLite_1.1-2 BiocInstaller_1.27.2 > > [11] httr_1.2.1 curl_2.6 > > [13] S4Vectors_0.15.2 tools_3.4.0 > > [15] Biobase_2.37.2 shiny_1.0.3 > > [17] httpuv_1.3.3 yaml_2.1.14 > > [19] compiler_3.4.0 AnnotationDbi_1.39.1 > > [21] memoise_1.1.0 htmltools_0.3.6 > > [23] interactiveDisplayBase_1.15.0 > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > [email protected] mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > -- Levi Waldron http://www.waldronlab.org Assistant Professor of Biostatistics CUNY School of Public Health US: +1 646-364-9616 Skype: levi.waldron [[alternative HTML version deleted]] _______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
