Hello all,
The ensembl 89 gtf (converted to GRanges on the fly) and fasta (twobit files)
been added to AnnotationHub and are currently available in Bioc3.6
(development) with AnnotationHub (<= 2.9.0):
> library(AnnotationHub)
> hub = AnnotationHub()
updating metadata: retrieving 1 resource
|======================================================================| 100%
snapshotDate(): 2017-06-07
> length(query(hub, c("ensembl", "gtf", "release-89")))
[1] 215
> length(query(hub, c("fasta", "release-89", "twobit")))
[1] 353
Thank you
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
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