Hi, I'm not sure what's going on here. It looks there haven't been any changes to the vignette and the package doesn't have the timeout in devel.
I went on the release builder and was able to build the vignette which confirms that the vignette doesn't hang, it just takes a long time. When I ran the vignette I did notice one example took a long time. This is the output - Chr: 1 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 3 3 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 6 3 Chr: 2 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 3 3 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 Chr: 3 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 3 3 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 Chr: 4 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 3 3 34 35 36 37 38 39 40 41 42 43 44 45 46 47 ... I would recommend shortening that example to use just a few chromosomes instead of all 22. On the windows machines packages are built on both 32 and 64 bit architecture so it can take twice as long as the other builders. This isn't really a satisfying answer because the package doesn't timeout in devel. Not sure what else to suggest except let's keep an eye on it. Valerie On 06/08/2017 06:51 AM, Krithika Bhuvaneshwar wrote: > Hello, > > We are the maintainers of the CINdex package. > > I believe when the upgrade to the new Bioconductor version happened, > the package times out in Windows environment during build. > > https://bioconductor.org/packages/release/bioc/html/CINdex.html > > Could you please let us know if we need to do anything from our end ? > > Thanks, > Krithika > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
