Hi, Hi,
any suggestions or better diagnostics that could help us fixing this, in case it really is something in xcms ? There were a few earlier reports with similar messages, back in 2013, slightly hinting at virus scanners: http://r.789695.n4.nabble.com/quot-Failed-to-locate-the-texi2pdf-output-file-quot-td4664111.html Back in 2015, but both referring to SPB: https://github.com/Bioconductor/packagebuilder/issues/2 https://github.com/Bioconductor/packagebuilder/issues/26 And from 2016 without any resolution: https://github.com/r-hub/rhub/issues/58 Yours, Steffen On Thu, 2017-07-27 at 10:23 +0000, Rainer Johannes wrote: > Dear all, > > one of the xcms vignettes fails to build on tokay1 recently with the > error message: > > Warning: running command > '"C:\PROGRA˜1\MIKTEX˜1.9\miktex\bin\x64\texify.exe" --quiet --pdf > "xcmsDirect.tex" --max-iterations=20 -I "C:/Users/biocbuild/bbs-3.6- > bioc/R/share/texmf/tex/latex" -I "C:/Users/biocbuild/bbs-3.6- > bioc/R/share/texmf/bibtex/bst"' had status 1 > Error in find_vignette_product(name, by = "texi2pdf", engine = > engine) : > Failed to locate the 'texi2pdf' output file (by engine > 'utils::Sweave') for vignette with name 'xcmsDirect'. The following > files exist in directory '.': 'FlowChart.graffle', 'FlowChart.pdf', > 'benchmarking.Rmd-notrun', 'biomed-central.csl', 'example.tsv', > 'new_functionality.R', 'new_functionality.Rmd', > 'new_functionality.html', 'new_functionality.org', 'references.bib', > 'xcms.bib', 'xcms.org<http://xcms.org>', 'xcmsDirect-005.pdf', > 'xcmsDirect.Rnw', 'xcmsDirect.tex', 'xcmsInstall.Rnw', 'xcmsMSn.Rnw', > 'xcmsPreprocess.Rnw-notrun' > Calls: <Anonymous> -> find_vignette_product > Execution halted > > is this some problem with tokay1 or is it related to the vignette (I > have no problems building this vignette in my Windows build machine)? > > thanks, jo > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel -- IPB Halle AG Massenspektrometrie & Bioinformatik Dr. Steffen Neumann http://www.IPB-Halle.DE Weinberg 3 http://msbi.bic-gh.de 06120 Halle Tel. +49 (0) 345 5582 - 1470 +49 (0) 345 5582 - 0 sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
