Thank you, Nitesh. Is there any difference at all now in how experimental data vs. software packages are tracked and checked?
On Tue, Sep 5, 2017 at 8:40 PM, Turaga, Nitesh < nitesh.tur...@roswellpark.org> wrote: > Hi Levi, > > The external_data_store.txt file is not needed anymore. > > The current git.bioconductor.org server does not store files in the LFS > mode, so you can just add a file, commit and push. But for Github, you > might have to use LFS for such large files. I’ll look into this more and > get back to you with a detailed reply. > > Best, > > Nitesh > > > On Sep 5, 2017, at 4:49 PM, Levi Waldron <lwaldron.resea...@gmail.com> > wrote: > > > > Also, can I now remove external_data_store.txt? > > > > $ cat external_data_store.txt > > data > > inst/extdata > > > > > > On Tue, Sep 5, 2017 at 4:38 PM, Levi Waldron < > lwaldron.resea...@gmail.com> > > wrote: > > > >> Are a couple extra commands needed at https://www.bioconductor. > >> org/developers/how-to/git/maintain-github-bioc/ for experimental data > >> packages? I followed the instructions here for curatedOvarianData, but > got > >> GitHub warnings on push: > >> > >> remote: warning: GH001: Large files detected. You may want to try Git > >> Large File Storage - https://git-lfs.github.com. > >> remote: warning: See http://git.io/iEPt8g for more information. > >> remote: warning: File data/TCGA_eset.rda is 53.10 MB; this is larger > than > >> GitHub's recommended maximum file size of 50.00 MB > >> > >> So I followed the instructions at https://git-lfs.github.com/: > >> > >> git lfs track "*.rda" > >> git add .gitattributes > >> git commit -a > >> > >> Does this seem correct, and is there anything else to know for > >> experimental data packages with large files? > >> > >> -- > >> Levi Waldron > >> http://www.waldronlab.org > >> Assistant Professor of Biostatistics CUNY School of Public Health > >> US: +1 646-364-9616 <+1%20646-364-9616> > >> Skype: levi.waldron > >> > > > > > > > > -- > > Levi Waldron > > http://www.waldronlab.org > > Assistant Professor of Biostatistics CUNY School of Public Health > > US: +1 646-364-9616 Skype: > > levi.waldron > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. -- Levi Waldron http://www.waldronlab.org Assistant Professor of Biostatistics CUNY School of Public Health US: +1 646-364-9616 Skype: levi.waldron [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
