http://bioconductor.org/developers/how-to/git/faq/
You need point#16 on the FAQ section. Change your permissions. > On Sep 12, 2017, at 12:35 PM, Luo Weijun <luo_wei...@yahoo.com> wrote: > > The original file name was id_rsa.pub.pub. > I changed it to id_rsa.pub or id_rsa now. It stops complaining about the > invalid format, but still have permission problem. > > ##id_rsa.pub > luo$ git clone g...@git.bioconductor.org:packages/pathview > Cloning into 'pathview'... > Permission denied (publickey). > fatal: Could not read from remote repository. > > Please make sure you have the correct access rights > and the repository exists. > > ##id_rsa > git clone g...@git.bioconductor.org:packages/pathview > Cloning into 'pathview'... > @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ > @ WARNING: UNPROTECTED PRIVATE KEY FILE! @ > @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ > Permissions 0644 for '~/.ssh/id_rsa' are too open. > It is required that your private key files are NOT accessible by others. > This private key will be ignored. > Load key "~/.ssh/id_rsa": bad permissions > Permission denied (publickey). > fatal: Could not read from remote repository. > > Please make sure you have the correct access rights > and the repository exists. > > -------------------------------------------- > On Tue, 9/12/17, Turaga, Nitesh <nitesh.tur...@roswellpark.org> wrote: > > Subject: Re: problem with git / svn transition: ssh keys > To: "Luo Weijun" <luo_wei...@yahoo.com> > Cc: "Morgan, Martin" <martin.mor...@roswellpark.org>, "Bioc-devel" > <bioc-devel@r-project.org> > Date: Tuesday, September 12, 2017, 12:20 PM > > What name did you store your key > under? “id_rsa” or something else? > > Nitesh > >> On > Sep 12, 2017, at 12:11 PM, Luo Weijun <luo_wei...@yahoo.com> > wrote: >> >> the > following the are commands I used and output: >> >> luo$ git clone g...@git.bioconductor.org:packages/pathview >> Cloning into 'pathview'... >> key_load_public: invalid format >> Permission denied (publickey). >> fatal: Could not read from remote > repository. >> >> > Please make sure you have the correct access rights >> and the repository exists. >> luo$ ssh -T g...@git.bioconductor.org >> key_load_public: invalid format >> Permission denied (publickey). >> >> Is it because the > ssh key is still not in the right format because the suffix > " luo_wei...@yahoo.com" > was removed as I mentioned in previous email? >> >> BTW, my ssh key > should be associated with gage package too. >> >> > -------------------------------------------- >> On Tue, 9/12/17, Turaga, Nitesh <nitesh.tur...@roswellpark.org> > wrote: >> >> Subject: > Re: problem with git / svn transition: ssh keys >> To: "Luo Weijun" <luo_wei...@yahoo.com> >> Cc: "Morgan, Martin" <martin.mor...@roswellpark.org>, > "Bioc-devel" <bioc-devel@r-project.org> >> Date: Tuesday, September 12, 2017, 11:47 > AM >> >> Your key is in > our system. It >> starts with, >> >> ssh-rsa >> > AAAAB3NzaC1yc2EAAAADAQABAAACAQD4+kbkP7J0rkIGy81r9fO+4tCgHzQXfkthRu/MFPE7AMvZy7SeNf9WuxPQtMeOjAl >> >> It is associated > with the >> correct package “pathview” > and also “gageData”. >> >> Please give me more >> > information to help you. Show me the exact commands you > are >> running. >> >> i.e >> >> git clone g...@git.bioconductor.org:packages/pathview >> >> If that doesn’t > work, >> then, >> >> ssh -T g...@git.bioconductor.org >> >> >> Check out put for >> > “pathview” package. Please also send the email to >> Bioc-devel. >> >> Best, >> >> Nitesh >> >> >>> On Sep 12, 2017, > at 11:39 >> AM, Luo Weijun <luo_wei...@yahoo.com> >> wrote: >>> >>> Nitesh, >>> I > resubmit my ssh public key based on your >> suggestion last Friday. But I still cannot > git clone my >> package respository. The > same error remain as below. Can you >> > check into this? >>> Weijun >>> >>> Cloning > into >> 'pathview'... >>> key_load_public: >> > invalid format >>> Permission denied >> (publickey). >>> > fatal: Could not read from >> remote > repository. >>> >>> Please make sure you have the > correct >> access rights >>> and the repository >> exists. >>> >>> >> > -------------------------------------------- >>> On Fri, 9/8/17, Luo Weijun <luo_wei...@yahoo.com> >> wrote: >>> >>> Subject: >> Re: > problem with git / svn transition: ssh keys >>> To: "NiteshTuraga" <nitesh.tur...@roswellpark.org> >>> Cc: "MartinMorgan" <martin.mor...@roswellpark.org> >>> Date: Friday, September 8, 2017, > 12:23 >> PM >>> >>> Nitesh, >>> I > just submitted it. The problem is >>> > gone indeed. >>> Could >> you process my request and assign >>> me >> the git > access? Thanks. >>> Weijun >>> >>> >> > -------------------------------------------- >>> On Fri, 9/8/17, Turaga, Nitesh <nitesh.tur...@roswellpark.org> >>> wrote: >>> >>> Subject: Re: problem with git / > svn >>> transition: ssh keys >>> To: "Luo Weijun" <luo_wei...@yahoo.com> >>> Cc: "Morgan, Martin" > <martin.mor...@roswellpark.org> >>> Date: Friday, September 8, 2017, >> 10:31 >>> AM >>> >>> Hi > Weijun, >>> >>> > I understand this was a problem >>> > earlier on our >>> end, >> and it has been fixed. >>> >>> Is it > still the case that it gives >>> the >>> “Github ID >> > cannot contain spaces” >>> error? If > so, >> can you >>> > take a screen shot and send >> it to > me. >>> I’ve tried it a few >>> times and it does not give me > that >>> error anymore. >>> >>> Nitesh > >>> >>> >>>> On Sep 8, 2017, >> at 10:22 >>> AM, > Luo Weijun <luo_wei...@yahoo.com> >>> wrote: >>>> > >>>> Nitesh, >>>> As I >> > mentioned previously, I >>> tried to >>> submit with the prefix ssh-rsa, > but >> it >>> always > complained >>> that “Github ID > cannot contain >>> spaces” since > there is a >>> space following > ssh-rsa. I guess it >>> will allow me > submit if >>> I remove the empty > space, but would >>> that be a > functional ssh >>> key? >>>> BTW, the >> web > form error“Github >>> ID cannot >> contain spaces” seem to >>> wrong as this >> is > ssh key >>> submission. >>>> Weijun >>>> >>> >>>> >>> >>> >> > -------------------------------------------- >>>> On Thu, 9/7/17, Turaga, Nitesh >>> <nitesh.tur...@roswellpark.org> >>> wrote: >>>> > >>>> Subject: >>> Re: >> problem > with git / svn transition: >>> ssh >> keys >>>> To: > "Luo Weijun" >> <luo_wei...@yahoo.com> >>>> Cc: "Morgan, Martin" > <martin.mor...@roswellpark.org> >>>> Date: Thursday, September 7, >>> 2017, 5:20 >>> > PM >>>> >>>> Hi Luo, >>>> >>>> The > key we >> have on >>> file is missing the >> starting >>>> > `ssh-rsa`. >>> Could you please > resubmit? >>>> >>>> Best, >>>> > >>>> Nitesh >>>> >>>> >>>>> >>>> > On Sep >> 7, 2017, at 5:04 PM, Luo >>> Weijun >>> > <luo_wei...@yahoo.com> >>>> wrote: >>>>> >> >>>>> Just want >>>> to make >>> > sure >> that you see my email below. I >>> still >> have the >>>> same problem at this >> time. >>>>> > Weijun >>>>> >>>>> >>>> > >>> >>> >> > -------------------------------------------- >>>>> On Wed, 9/6/17, Luo Weijun >>> <luo_wei...@yahoo.com> >>>> wrote: >>>>> >> >>>>> Subject: >>>> problem >>> > with >> git / svn transition: ssh keys >>>>> >> >>> To: "NiteshTuraga" <nitesh.tur...@roswellpark.org> >>>>> Cc: "Martin > Morgan" >> <martin.mor...@roswellpark.org> >>>>> Date: Wednesday, September > 6, >>> 2017, >>> > 11:32 >>>> AM >>>>> >>>>> Dear >>>> >> Nitesh, >>>>> I submitted my ssh >> keys >>>> > online >>>>> yesterday. >>> >> However, I > still >>>> cannot git clone >> my >>> packages >>>>> from >>>> >>> > github. Could you help me? Thanks! >>>>> >>> > The >>>> error message below see > to >>>>> complained >>>> the >>> > public key >> format. My ssh public key >>> looks >>>>> > like: >>>>> >>> ssh-rsa >>>> AAAAB3NzaC1y….FHQ== luo_wei...@yahoo.com >>>>> but the google web form >>> always >>>>> >> > complained “Github ID >>> cannot >>> contain >>>> >> spaces”. > So I >>>>> removed the >> prefix and >>>> > suffix parts: >> "ssh-rsa " > and >>> " luo_wei...@yahoo.com". >>>>> it got through after that. >>>>> Weijun >>>>> >>>>> >>>>> $ git clone >>> >> g...@git.bioconductor.org:packages/pathview >>>>> Cloning into >> 'pathview'... >>>>> >> > key_load_public: invalid >>> format >>>>> Permission denied >>> (publickey). >>>>> >> fatal: > Could not read from >>> remote >>>>> repository. >>>>> >>> >>>>> Please make sure you have >>> the >>> > correct >>>>> access rights >>>>> and the >>>> >> >>> repository exists. >>>> >>>> >>>> >>>> > This >> email >>>> > message >>> may contain legally > privileged and/or >>> confidential >>>> >> > information. If you are not the >>> > >> intended >>> > recipient(s), or >>>> the employee > or agent >>> responsible for the > delivery of this >>>> >>> message to the >> > intended recipient(s), >>> you are >> hereby >>>> > notified that any >> disclosure, >>> copying, >>> > distribution, or use >>>> of this > email >>> >> > message is prohibited. If you have >>> >> received >>>> this message in error, >> please >>> notify > the >>> sender immediately >>>> by e-mail and delete >>> this email message from your >>> computer. >>>> > >>> Thank you. >>> >>> >> >>> >>> This email >> > message may contain >>> legally >>> privileged and/or confidential >>> information. If you are not >>> the intended recipient(s), or > the >>> employee or agent >>> >> responsible > for the delivery of this >>> >> message to the intended >>> recipient(s), >> > you are hereby notified >>> that any >> disclosure, >>> > copying, distribution, or >> use of > this >>> email message is >>> prohibited. If you have > received >>> this message in error, >>> please notify the sender > immediately >>> by e-mail and delete >>> this email message from your >> computer. >>> > Thank >>> >> > you. >> >> >> >> This email message > may contain legally >> privileged and/or > confidential information. If you are not >> the intended recipient(s), or the employee > or agent >> responsible for the delivery > of this message to the intended >> > recipient(s), you are hereby notified that any > disclosure, >> copying, distribution, or > use of this email message is >> > prohibited. If you have received this message in error, >> please notify the sender immediately by > e-mail and delete >> this email message > from your computer. Thank >> you. > > > > This email message may contain legally > privileged and/or confidential information. 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