Hi Carlos, Do you by any chance have 2 separate SVN id’s?
1. c.ruiz 2. c.ruiz-arenas Best, Nitesh > On Sep 14, 2017, at 12:17 PM, Carlos Ruiz <carlos.r...@isglobal.org> wrote: > > Hi, > Today I definitely was able to fetch from the Bioc git. However, I cannot > push. Here, the commands and the error: > > > C:\Users\cruiz.ISGLOBAL\Documents\MEAL [master =]> git push upstream master > Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to > the l > ist of known hosts. > FATAL: W any packages/MEAL c.ruiz DENIED by fallthru > (or you mis-spelled the reponame) > fatal: Could not read from remote repository. > > Please make sure you have the correct access rights > and the repository exists. > C:\Users\cruiz.ISGLOBAL\Documents\MEAL [master =]> git remote -v > origin https://github.com/isglobal-brge/MEAL.git (fetch) > origin https://github.com/isglobal-brge/MEAL.git (push) > upstream g...@git.bioconductor.org:packages/MEAL.git (fetch) > upstream g...@git.bioconductor.org:packages/MEAL.git (push) > > Can you help me? > > Thanks, > > Carlos Ruiz > > > El 13/09/2017 a las 10:09, Carlos Ruiz escribió: >> Hi to both, >> >> These are the commands that I tried and the error: >> >> $ git remote -v >> origin https://github.com/isglobal-brge/MEAL.git (fetch) >> origin https://github.com/isglobal-brge/MEAL.git (push) >> upstream g...@git.bioconductor.org:packages/MEAL (fetch) >> upstream g...@git.bioconductor.org:packages/MEAL (push) >> >> >> $ git fetch --all >> Fetching origin >> Fetching upstream >> Permission denied (publickey). >> fatal: Could not read from remote repository. >> >> Please make sure you have the correct access rights >> and the repository exists. >> error: Could not fetch upstream >> >> I think that there was a similar error in the BiocDevel list that was solved >> after sending the ssh keys. I resent the form yesterday so I hope tomorrow >> I'll be able to push. Just in case, my svn user name was c.ruiz-arenas. >> >> Bests, >> Carlos Ruiz >> >> El 12/09/2017 a las 18:12, Shepherd, Lori escribió: >>> Once you submit the key you should have access. Please provide the calls >>> you are using and also the results of git remote -v >>> >>> >>> >>> Lori Shepherd >>> Bioconductor Core Team >>> Roswell Park Cancer Institute >>> Department of Biostatistics & Bioinformatics >>> Elm & Carlton Streets >>> Buffalo, New York 14263 >>> From: Carlos Ruiz <carlos.r...@isglobal.org> >>> Sent: Tuesday, September 12, 2017 12:08:15 PM >>> To: Shepherd, Lori >>> Subject: Re: Bioconductor failing package MEAL >>> >>> Hi, >>> >>> I am experiencing some problems with the git system. I think that i have >>> not properly configured the ssh keys. I have filled again the form with the >>> ssh keys (user name: c.ruiz-arenas). Once you introduced my keys in the >>> system, should I do anything else to update the repo? Should I change the >>> configuration on git? >>> >>> Thank you, >>> Carlos Ruiz >>> >>> El 12/09/2017 a las 17:37, Shepherd, Lori escribió: >>>> Please update. We have temporarily added your package to the deprecation >>>> list as we did not hear from you and there were no updates. If you package >>>> builds and checks cleanly we will remove it from the list of deprecated >>>> packages. >>>> >>>> Please also be advised we have transitioned to git. There are some useful >>>> information here: >>>> http://bioconductor.org/developers/how-to/git/ >>>> >>>> >>>> Lori Shepherd >>>> Bioconductor Core Team >>>> Roswell Park Cancer Institute >>>> Department of Biostatistics & Bioinformatics >>>> Elm & Carlton Streets >>>> Buffalo, New York 14263 >>>> From: Carlos Ruiz <carlos.r...@isglobal.org> >>>> Sent: Tuesday, September 12, 2017 11:28:33 AM >>>> To: Shepherd, Lori >>>> Subject: Re: Bioconductor failing package MEAL >>>> >>>> Hi Lori, >>>> >>>> I apologize for not replying you sooner but I have just finished my >>>> holidays today. I have finished the vignettes today and I only need to >>>> update the tests to have a fully working version again. Therefore, I >>>> expect to push my changes during this week. >>>> >>>> MEAL contains wrappers to other methods to ease performing methylation and >>>> gene expression analyses. I previously created a data package to show MEAL >>>> functionalities and I used it in my vignettes. We have created a new data >>>> package (BRGEdata) in our group that could be used by different packages. >>>> My colleague uploaded it in the submission of omicRexpsome but he is >>>> experiencing some problems that are trying to solve with Martin. >>>> >>>> Until this package is not working, the new version of MEAL will fail to >>>> build the vignettes. Should I wait until BRGEdata issue is solved or can I >>>> update the package without including the vignettes? >>>> >>>> Bests, >>>> >>>> 2017-09-01 14:21 GMT+02:00 Shepherd, Lori <lori.sheph...@roswellpark.org>: >>>> Dear MEAL maintainer, >>>> >>>> The MEAL package continues to fail to pass 'R CMD build' on all platforms >>>> in the devel version of Bioconductor (i.e. BioC 3.6): >>>> >>>> http://bioconductor.org/checkResults/3.6/bioc-LATEST/MEAL/malbec1-buildsrc.html >>>> >>>> If no action is taken we will begin the deprecation process for your >>>> package. Thank you for your time and effort. >>>> >>>> I understand that you reached out indicating there were big changes to >>>> MEAL; As it is getting closer to our next release (end Oct), these changes >>>> should be pushed as soon as possible to allow for others who depend on >>>> your package to update there packages accordingly >>>> >>>> Thanks for your contribution to Bioconductor. >>>> >>>> >>>> Lori Shepherd >>>> Bioconductor Core Team >>>> Roswell Park Cancer Institute >>>> Department of Biostatistics & Bioinformatics >>>> Elm & Carlton Streets >>>> Buffalo, New York 14263 >>>> From: Carlos Ruiz <carlos.r...@isglobal.org> >>>> Sent: Friday, July 21, 2017 9:24:41 AM >>>> To: Shepherd, Lori >>>> Subject: Re: Bioconductor failing package MEAL >>>> >>>> Hi Lori, >>>> >>>> I apology for not answering to you before. I am doing big changes to MEAL >>>> package. Currently, I have a working version but I have to redo the >>>> vignette and the tests. Once I finish them, I will make a new bump to my >>>> package. >>>> >>>> Bests, >>>> Carlos Ruiz >>>> >>>> >>>> 2017-07-21 15:17 GMT+02:00 Shepherd, Lori <lori.sheph...@roswellpark.org>: >>>> Dear MEAL maintainer, >>>> >>>> The MEAL package continues to fail to pass 'R CMD build' on all platforms >>>> in the devel version of Bioconductor (i.e. BioC 3.6): >>>> >>>> http://bioconductor.org/checkResults/3.6/bioc-LATEST/MEAL/malbec1-buildsrc.html >>>> >>>> Don't hesitate to ask questions on the support site if you are having >>>> trouble. >>>> >>>> If no action is taken over the next several weeks we will begin the >>>> deprecation process for your package. Thank you for your time and effort. >>>> >>>> >>>> Thanks for your contribution to Bioconductor. >>>> >>>> >>>> >>>> Lori Shepherd >>>> Bioconductor Core Team >>>> Roswell Park Cancer Institute >>>> Department of Biostatistics & Bioinformatics >>>> Elm & Carlton Streets >>>> Buffalo, New York 14263 >>>> From: Shepherd, Lori >>>> Sent: Wednesday, July 12, 2017 7:12:35 AM >>>> To: carles.hernan...@isglobal.org; juanr.gonza...@isglobal.org; >>>> carlos.r...@isglobal.org >>>> Subject: Bioconductor failing package MEAL >>>> >>>> Dear MEAL maintainer, >>>> >>>> I'd like to bring to your attention that the MAIT package is failing to >>>> pass 'R CMD build' on all platforms in the devel version of Bioconductor >>>> (i.e. BioC 3.6): >>>> >>>> http://bioconductor.org/checkResults/3.6/bioc-LATEST/MEAL/malbec1-buildsrc.html >>>> >>>> Would you mind taking a look at this? Don't hesitate to ask on the >>>> bioc-devel mailing list if you have any question or need help. >>>> >>>> If no action is taken over the next several weeks we will begin the >>>> deprecation process for your package. Thank you for your time and effort. >>>> >>>> >>>> Thanks for your contribution to Bioconductor. >>>> >>>> >>>> Lori Shepherd >>>> Bioconductor Core Team >>>> Roswell Park Cancer Institute >>>> Department of Biostatistics & Bioinformatics >>>> Elm & Carlton Streets >>>> Buffalo, New York 14263 >>>> >>>> This email message may contain legally privileged and/or confidential >>>> information. If you are not the intended recipient(s), or the employee or >>>> agent responsible for the delivery of this message to the intended >>>> recipient(s), you are hereby notified that any disclosure, copying, >>>> distribution, or use of this email message is prohibited. If you have >>>> received this message in error, please notify the sender immediately by >>>> e-mail and delete this email message from your computer. Thank you. >>>> >>>> >>>> >>>> -- >>>> Carlos Ruiz >>>> PhD Student >>>> ISGlobal >>>> Instituto de Salud Global de Barcelona - Campus MAR >>>> Barcelona Biomedical Research Park (PRBB) (office 183.01 C) >>>> Doctor Aiguader, 88 >>>> 08003 Barcelona, Spain >>>> Tel. +34 93 214 73 09 >>>> carlos.r...@isglobal.org >>>> www.isglobal.org >>>> >>>> This message is intended exclusively for its addressee and may contain >>>> information that is CONFIDENTIAL and protected by professional privilege. >>>> If you are not the intended recipient you are hereby notified that any >>>> dissemination, copy or disclosure of this communication is strictly >>>> prohibited by law. If this message has been received in error, please >>>> immediately notify us via e-mail and delete it. >>>> DATA PROTECTION. We inform you that your personal data, including your >>>> e-mail address and data included in your email correspondence, are >>>> included in the ISGlobal Foundation files. Your personal data will be used >>>> for the purpose of contacting you and sending information on the >>>> activities of the above foundations. You can exercise your rights of >>>> access, rectification, cancellation and opposition by contacting the >>>> following address: l...@isglobal.org. ISGlobal Privacy Policy at >>>> www.isglobal.org. >>>> ----------------------------------------------------------------------------------------------------------------------------- >>>> CONFIDENCIALIDAD. Este mensaje y sus anexos se dirigen exclusivamente a su >>>> destinatario y puede contener información confidencial, por lo que la >>>> utilización, divulgación y/o copia sin autorización está prohibida por la >>>> legislación vigente. Si ha recibido este mensaje por error, le rogamos lo >>>> comunique inmediatamente por esta misma vía y proceda a su destrucción. >>>> PROTECCIÓN DE DATOS. Sus datos de carácter personal utilizados en este >>>> envío, incluida su dirección de e-mail, forman parte de ficheros de >>>> titularidad de la Fundación ISGlobal para cualquier finalidades de >>>> contacto, relación institucional y/o envío de información sobre sus >>>> actividades. Los datos que usted nos pueda facilitar contestando este >>>> correo quedarán incorporados en los correspondientes ficheros, autorizando >>>> el uso de su dirección de e-mail para las finalidades citadas. Puede >>>> ejercer los derechos de acceso, rectificación, cancelación y oposición >>>> dirigiéndose a l...@isglobal.org . Política de privacidad en >>>> www.isglobal.org. >>>> >>>> This email message may contain legally privileged and/or confidential >>>> information. If you are not the intended recipient(s), or the employee or >>>> agent responsible for the delivery of this message to the intended >>>> recipient(s), you are hereby notified that any disclosure, copying, >>>> distribution, or use of this email message is prohibited. If you have >>>> received this message in error, please notify the sender immediately by >>>> e-mail and delete this email message from your computer. Thank you. >>>> >>>> >>>> >>>> -- >>>> Carlos Ruiz >>>> PhD Student >>>> ISGlobal >>>> Instituto de Salud Global de Barcelona - Campus MAR >>>> Barcelona Biomedical Research Park (PRBB) (office 183.01 C) >>>> Doctor Aiguader, 88 >>>> 08003 Barcelona, Spain >>>> Tel. +34 93 214 73 09 >>>> carlos.r...@isglobal.org >>>> www.isglobal.org >>>> >>>> This message is intended exclusively for its addressee and may contain >>>> information that is CONFIDENTIAL and protected by professional privilege. >>>> If you are not the intended recipient you are hereby notified that any >>>> dissemination, copy or disclosure of this communication is strictly >>>> prohibited by law. If this message has been received in error, please >>>> immediately notify us via e-mail and delete it. >>>> DATA PROTECTION. We inform you that your personal data, including your >>>> e-mail address and data included in your email correspondence, are >>>> included in the ISGlobal Foundation files. Your personal data will be used >>>> for the purpose of contacting you and sending information on the >>>> activities of the above foundations. You can exercise your rights of >>>> access, rectification, cancellation and opposition by contacting the >>>> following address: l...@isglobal.org. ISGlobal Privacy Policy at >>>> www.isglobal.org. >>>> ----------------------------------------------------------------------------------------------------------------------------- >>>> CONFIDENCIALIDAD. Este mensaje y sus anexos se dirigen exclusivamente a su >>>> destinatario y puede contener información confidencial, por lo que la >>>> utilización, divulgación y/o copia sin autorización está prohibida por la >>>> legislación vigente. Si ha recibido este mensaje por error, le rogamos lo >>>> comunique inmediatamente por esta misma vía y proceda a su destrucción. >>>> PROTECCIÓN DE DATOS. Sus datos de carácter personal utilizados en este >>>> envío, incluida su dirección de e-mail, forman parte de ficheros de >>>> titularidad de la Fundación ISGlobal para cualquier finalidades de >>>> contacto, relación institucional y/o envío de información sobre sus >>>> actividades. Los datos que usted nos pueda facilitar contestando este >>>> correo quedarán incorporados en los correspondientes ficheros, autorizando >>>> el uso de su dirección de e-mail para las finalidades citadas. Puede >>>> ejercer los derechos de acceso, rectificación, cancelación y oposición >>>> dirigiéndose a l...@isglobal.org . Política de privacidad en >>>> www.isglobal.org. >>>> >>>> This email message may contain legally privileged and/or confidential >>>> information. If you are not the intended recipient(s), or the employee or >>>> agent responsible for the delivery of this message to the intended >>>> recipient(s), you are hereby notified that any disclosure, copying, >>>> distribution, or use of this email message is prohibited. If you have >>>> received this message in error, please notify the sender immediately by >>>> e-mail and delete this email message from your computer. Thank you. >>> >>> -- >>> Carlos Ruiz >>> PhD Student >>> ISGlobal >>> Barcelona Institute for Global Health - Campus MAR >>> Barcelona Biomedical Research Park (PRBB) (office 001) >>> Doctor Aiguader, 88 >>> 08003 Barcelona, Spain >>> Tel. +34 93 214 7309 >>> >>> carlos.r...@isglobal.org >>> www.isglobal.org >>> >>> >>> We are pleased to tell you that after three years of a strategic alliance >>> between ISGlobal and CREAL, both institutions have merged. The resulting >>> institution, which retains the ISGlobal name, will build upon the existing >>> areas of excellence to become a world-class player in research, education >>> and innovation in Global Health. More info at: >>> http://ow.ly/krQd301Nj3w >>> >>> >>> >>> >>> This message is intended exclusively for its addressee and may contain >>> information that is CONFIDENTIAL and protected by professional privilege. >>> If you are not the intended recipient you are hereby notified that any >>> dissemination, copy or disclosure of this communication is strictly >>> prohibited by law. If this message has been received in error, please >>> immediately notify us via e-mail and delete it. >>> >>> DATA PROTECTION. We inform you that your personal data, including your >>> e-mail address and data included in your email correspondence, are included >>> in the ISGlobal Foundation files. Your personal data will be used for the >>> purpose of contacting you and sending information on the activities of the >>> above foundations. You can exercise your rights of access, rectification, >>> cancellation and opposition by contacting the following address: >>> l...@isglobal.org. ISGlobal Privacy Policy at www.isglobal.org >>> . >>> >>> >>> >>> >>> This message is intended exclusively for its addressee and may contain >>> information that is CONFIDENTIAL and protected by professional privilege. >>> If you are not the intended recipient you are hereby notified that any >>> dissemination, copy or disclosure of this communication is strictly >>> prohibited by law. If this message has been received in error, please >>> immediately notify us via e-mail and delete it. >>> DATA PROTECTION. We inform you that your personal data, including your >>> e-mail address and data included in your email correspondence, are included >>> in the ISGlobal Foundation files. Your personal data will be used for the >>> purpose of contacting you and sending information on the activities of the >>> above foundations. You can exercise your rights of access, rectification, >>> cancellation and opposition by contacting the following address: >>> l...@isglobal.org. ISGlobal Privacy Policy at www.isglobal.org. >>> ----------------------------------------------------------------------------------------------------------------------------- >>> CONFIDENCIALIDAD. Este mensaje y sus anexos se dirigen exclusivamente a su >>> destinatario y puede contener información confidencial, por lo que la >>> utilización, divulgación y/o copia sin autorización está prohibida por la >>> legislación vigente. Si ha recibido este mensaje por error, le rogamos lo >>> comunique inmediatamente por esta misma vía y proceda a su destrucción. >>> PROTECCIÓN DE DATOS. Sus datos de carácter personal utilizados en este >>> envío, incluida su dirección de e-mail, forman parte de ficheros de >>> titularidad de la Fundación ISGlobal para cualquier finalidades de >>> contacto, relación institucional y/o envío de información sobre sus >>> actividades. Los datos que usted nos pueda facilitar contestando este >>> correo quedarán incorporados en los correspondientes ficheros, autorizando >>> el uso de su dirección de e-mail para las finalidades citadas. Puede >>> ejercer los derechos de acceso, rectificación, cancelación y oposición >>> dirigiéndose a l...@isglobal.org . Política de privacidad en >>> www.isglobal.org. >>> >>> This email message may contain legally privileged and/or confidential >>> information. If you are not the intended recipient(s), or the employee or >>> agent responsible for the delivery of this message to the intended >>> recipient(s), you are hereby notified that any disclosure, copying, >>> distribution, or use of this email message is prohibited. If you have >>> received this message in error, please notify the sender immediately by >>> e-mail and delete this email message from your computer. Thank you. >> >> -- >> Carlos Ruiz >> PhD Student >> ISGlobal >> Barcelona Institute for Global Health - Campus MAR >> Barcelona Biomedical Research Park (PRBB) (office 001) >> Doctor Aiguader, 88 >> 08003 Barcelona, Spain >> Tel. +34 93 214 7309 >> >> carlos.r...@isglobal.org >> www.isglobal.org >> >> >> We are pleased to tell you that after three years of a strategic alliance >> between ISGlobal and CREAL, both institutions have merged. The resulting >> institution, which retains the ISGlobal name, will build upon the existing >> areas of excellence to become a world-class player in research, education >> and innovation in Global Health. More info at: >> http://ow.ly/krQd301Nj3w >> >> >> >> >> This message is intended exclusively for its addressee and may contain >> information that is CONFIDENTIAL and protected by professional privilege. If >> you are not the intended recipient you are hereby notified that any >> dissemination, copy or disclosure of this communication is strictly >> prohibited by law. If this message has been received in error, please >> immediately notify us via e-mail and delete it. >> >> DATA PROTECTION. We inform you that your personal data, including your >> e-mail address and data included in your email correspondence, are included >> in the ISGlobal Foundation files. Your personal data will be used for the >> purpose of contacting you and sending information on the activities of the >> above foundations. You can exercise your rights of access, rectification, >> cancellation and opposition by contacting the following address: >> l...@isglobal.org. ISGlobal Privacy Policy at www.isglobal.org >> . >> >> >> > > -- > Carlos Ruiz > PhD Student > ISGlobal > Barcelona Institute for Global Health - Campus MAR > Barcelona Biomedical Research Park (PRBB) (office 001) > Doctor Aiguader, 88 > 08003 Barcelona, Spain > Tel. +34 93 214 7309 > > carlos.r...@isglobal.org > www.isglobal.org > > > We are pleased to tell you that after three years of a strategic alliance > between ISGlobal and CREAL, both institutions have merged. The resulting > institution, which retains the ISGlobal name, will build upon the existing > areas of excellence to become a world-class player in research, education and > innovation in Global Health. More info at: > http://ow.ly/krQd301Nj3w > > > > > This message is intended exclusively for its addressee and may contain > information that is CONFIDENTIAL and protected by professional privilege. If > you are not the intended recipient you are hereby notified that any > dissemination, copy or disclosure of this communication is strictly > prohibited by law. If this message has been received in error, please > immediately notify us via e-mail and delete it. > > DATA PROTECTION. We inform you that your personal data, including your e-mail > address and data included in your email correspondence, are included in the > ISGlobal Foundation files. Your personal data will be used for the purpose of > contacting you and sending information on the activities of the above > foundations. You can exercise your rights of access, rectification, > cancellation and opposition by contacting the following address: > l...@isglobal.org. ISGlobal Privacy Policy at www.isglobal.org > . > > > > > This message is intended exclusively for its addressee and may contain > information that is CONFIDENTIAL and protected by professional privilege. If > you are not the intended recipient you are hereby notified that any > dissemination, copy or disclosure of this communication is strictly > prohibited by law. If this message has been received in error, please > immediately notify us via e-mail and delete it. > DATA PROTECTION. We inform you that your personal data, including your e-mail > address and data included in your email correspondence, are included in the > ISGlobal Foundation files. Your personal data will be used for the purpose of > contacting you and sending information on the activities of the above > foundations. You can exercise your rights of access, rectification, > cancellation and opposition by contacting the following address: > l...@isglobal.org. ISGlobal Privacy Policy at www.isglobal.org. > ----------------------------------------------------------------------------------------------------------------------------- > CONFIDENCIALIDAD. Este mensaje y sus anexos se dirigen exclusivamente a su > destinatario y puede contener información confidencial, por lo que la > utilización, divulgación y/o copia sin autorización está prohibida por la > legislación vigente. Si ha recibido este mensaje por error, le rogamos lo > comunique inmediatamente por esta misma vía y proceda a su destrucción. > PROTECCIÓN DE DATOS. Sus datos de carácter personal utilizados en este envío, > incluida su dirección de e-mail, forman parte de ficheros de titularidad de > la Fundación ISGlobal para cualquier finalidades de contacto, relación > institucional y/o envío de información sobre sus actividades. Los datos que > usted nos pueda facilitar contestando este correo quedarán incorporados en > los correspondientes ficheros, autorizando el uso de su dirección de e-mail > para las finalidades citadas. Puede ejercer los derechos de acceso, > rectificación, cancelación y oposición dirigiéndose a l...@isglobal.org . > Política de privacidad en www.isglobal.org. This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
