On 09/15/2017 10:01 AM, Nan Xiao wrote:
Hi Vladimir,
- it looks like the same issue as reported here a few days ago:
https://stat.ethz.ch/pipermail/bioc-devel/2017-September/011540.html
Probably due to the hs-tls bug which caused the communication errors
between pandoc and Google servers.
so is this a 'pandoc' bug that could be / has been fixed, or can pandoc
be invoked in a way that would avoid this? It's pretty obscure...
Martin
Best,
-Nan
On Fri, Sep 15, 2017 at 5:40 AM, Vladimir Kiselev <
vladimir.yu.kise...@gmail.com> wrote:
Hi,
In my package's (scmap) vignette I plot a Sankey digram using gvisSankey
function from googleVis package. It used to work and the digram was
plotted, but now there is this error (on devel branch -
http://bioconductor.org/checkResults/devel/bioc-
LATEST/scmap/malbec1-buildsrc.html
):
pandoc: Could not fetch
https://www.google.com/jsapi?callback=displayChartSankeyID249e5aae1d64
TlsExceptionHostPort (HandshakeFailed Error_EOF) "www.google.com" 443
Error: processing vignette 'scmap.Rmd' failed with diagnostics:
pandoc document conversion failed with error 67
I suppose it's some network issue, since Sankey diagram are plotted through
a web browser. I used to have the same problem on my laptop, but switching
from wired network to WiFi fixed the issue.
Any ideas on devel-build solutions? At the moment I switched the plotting
off by using eval=FALSE.
Many thanks,
Vladimir
--
http://genat.uk
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