You can still submit to bioconductor despite this limitation. You could also do a os check in the examples and tests that fail on windows and make a comment that this is the case. If the program is not meant to run in windows there is options to handle that as well and the review assigned to you can assist you with this. If you feel the package is otherwise ready to submit to Bioconductor for review I would proceed.
https://github.com/Bioconductor/Contributions Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Anna Gogleva <gogleva....@gmail.com> Sent: Monday, October 2, 2017 5:36:57 AM To: bioc-devel@r-project.org Subject: [Bioc-devel] external dependencies Dear Bioconductor Team, I have written a package and was planning to submit it to Bioconductor one day. The package provides a set of wrapper functions around several existing command line tools to construct scalable and reproducible pipelines for secretome prediction. The package requires several external system dependencies to be installed in order to work (listed in the SystemRequirements filed). I have a top-level README describing in detail how to install the required dependencies and a shell script to automate this process. The thing is, some of the external dependencies were not designed to work on Windows - causing certain unit tests and examples to fail during the automatic R CMD check on Windows. I have run R CMD check on Mac and Linux and the package passes without errors, warnings or notes. It also satisfies the remaining requirements from the recommended package checklist. What would be the best way to proceed? Would it be still ok to submit the package though it is not fully functional on Windows due to unavailability of certain external dependencies? Thank you for your advice, Anna Gogleva [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
