Thanks for the reply! For now I have commented out the problematic lines (# network <- pcxn.network(df) , in man files and vignette) and the package builds OK.
Cheers, Sokratis On 5 October 2017 at 12:56, Shepherd, Lori <lori.sheph...@roswellpark.org> wrote: > Yes, this seems to be a problem on our side. We are looking into it. For > now you can ignore this ERROR. > > There was a similar post here: > > https://stat.ethz.ch/pipermail/bioc-devel/2017-September/011773.html > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Cancer Institute > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of > Sokratis Kariotis <s.kario...@sheffield.ac.uk> > *Sent:* Monday, October 2, 2017 8:07:12 AM > *To:* Bioc-devel@r-project.org > *Subject:* [Bioc-devel] new package submission (pcxn) Abnormal build > result > > Hi all, > > Today I submitted a new package called "pcxn" in bioconductor and I got the > following Abnormal built result: > > Warning in fun(libname, pkgname) : > no display name and no $DISPLAY environment variable > > Error: processing vignette 'usingPCxNdb.Rnw' failed with diagnostics: > chunk 4 (label = pcxn.network) > Error in structure(.External(.C_dotTclObjv, objv), class = "tclObj") : > [tcl] invalid command name "font". > > The pcxn.network function uses igraph::tkplot to return a network, which > works every time on several local machines. After searching for a while it > seems that whenever this problem arises its because of the igraph package > installation. How can I deal with this? Thanks in advance. > > With Regards, > Sokratis > -- > Sokratis Kariotis > Scientific Programmer > Hidelab > Sheffield Institute for Translational Neuroscience > 385a Glossop Rd, Sheffield, S10 2HQ > <https://maps.google.com/?q=385a+Glossop+Rd,+Sheffield,+S10+2HQ&entry=gmail&source=g> > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. -- Sokratis Kariotis Scientific Programmer Hidelab Sheffield Institute for Translational Neuroscience 385a Glossop Rd, Sheffield, S10 2HQ [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel