Thanks for looking into this Andrzej! On Wed, Oct 11, 2017 at 6:02 PM, Andrzej Oleś <andrzej.o...@gmail.com> wrote: > Thanks Leo for drawing our attention to this issue. It will probably require > some additional modifications to the postprocessing scripts in order to > account for the now missing Mac tar balls. I will look into this. > > Cheers, > Andrzej > > On Wed, Oct 11, 2017 at 8:09 PM, Leonardo Collado Torres <lcoll...@jhu.edu> > wrote: >> >> Hi, >> >> I recently pushed some changes to recountWorkflow** that triggered new >> "postprocessing" jobs by the workflow builder. The last few (#412 up >> to 415) failed and I can see at >> >> http://docbuilder.bioconductor.org:8080/job/postprocessing/label=master/415/console >> that the error is related to the retirement of the Mac workflow build >> machine: >> >> + true >> + MACREPO=/var/lib/jenkins/repository/CRANrepo/3.6/bin/macosx/contrib/3.4 >> + mkdir -p /var/lib/jenkins/repository/CRANrepo/3.6/bin/macosx/contrib/3.4 >> + rm -f >> /var/lib/jenkins/repository/CRANrepo/3.6/bin/macosx/contrib/3.4/recountWorkflow_*.tgz >> + cp /var/lib/jenkins/repository/recountWorkflow/*.tgz >> /var/lib/jenkins/repository/CRANrepo/3.6/bin/macosx/contrib/3.4 >> cp: cannot stat '/var/lib/jenkins/repository/recountWorkflow/*.tgz': >> No such file or directory >> Build step 'Execute shell' marked build as failure >> >> Hopefully the Mac tar ball part can be ignored for now. I just wanted >> to check if the recount workflow looked ok after I made some changes >> suggested by Andrzej in another thread >> https://stat.ethz.ch/pipermail/bioc-devel/2017-August/011444.html. >> >> >> Thanks, >> Leo >> >> ** Changes I made are from versions 0.99.32 to 0.99.37 >> https://github.com/LieberInstitute/recountWorkflow/commits/master >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > >
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