library(GEOmetadb)
if(!file.exists('GEOmetadb.sqlite')) getSQLiteFile()
con <- dbConnect(SQLite(),'GEOmetadb.sqlite')
dbListFields(con,'gse')
## [1] "ID" "title"
## [3] "gse" "status"
## [5] "submission_date" "last_update_date"
## [7] "pubmed_id" "summary"
## [9] "type" "contributor"
## [11] "web_link" "overall_design"
## [13] "repeats" "repeats_sample_list"
## [15] "variable" "variable_description"
## [17] "contact" "supplementary_file"
Clearly, there should also be an "Organism" metadata field, e.g.:
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE4032
Please advise.
--
Bohdan Khomtchouk, Ph.D.
Postdoctoral Research Scholar, Gozani Lab
Department of Biology, Stanford University
Gilbert Building, Room 206
371 Serra Mall
Stanford, CA 94305-5020
https://profiles.stanford.edu/bohdan-khomtchouk
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