Hi all It looks like a number of packages have failed the latest Windows build due to Vignette/MikTeX issues.
The common denominator appears to be > Warning: running command > '"C:\PROGRA˜1\MIKTEX˜1.9\miktex\bin\x64\texify.exe" .. had status 1 > Error in find_vignette_product(name, by = "texi2pdf", engine = > engine) : Failed to locate the 'texi2pdf' output file (by engine > 'utils::Sweave') for vignette with name .. Is there a general MikTeX configuration problem on tokay1? Cheers Moritz > On 19 Oct 2017, at 09:19, sergi.pic...@upc.edu wrote: > > Dear developers, > > I have stumbled upon issues with our package vignette. In the windows build: > > * creating vignettes ...Warning: running command > '"C:/Users/biocbuild/bbs-3.6-bioc/R/bin/x64/Rscript" --vanilla > --default-packages= -e "tools::buildVignettes(dir = '.', tangle = > TRUE)"' had status 1 ERROR Invalid Parameter - /figure-html Warning: > running command 'C:\Windows\system32\cmd.exe /c convert > "intro_files/figure-html/unnamed-chunk-2-1.png" -trim > "intro_files/figure-html/unnamed-chunk-2-1.png"' had status 4 Warning > in shell(paste(c(cmd, args), collapse = " ")) : 'convert > "intro_files/figure-html/unnamed-chunk-2-1.png" -trim > "intro_files/figure-html/unnamed-chunk-2-1.png"' execution failed with > error code 4 > > Also: > > Warning: 'latex2' is deprecated. Use 'latex' instead.And: > Warning: running command > '"C:\PROGRA˜1\MIKTEX˜1.9\miktex\bin\x64\texify.exe" --quiet --pdf > "diffuStats.tex" --max-iterations=20 -I > "C:/Users/biocbuild/bbs-3.6-bioc/R/share/texmf/tex/latex" -I > "C:/Users/biocbuild/bbs-3.6-bioc/R/share/texmf/bibtex/bst"' had status > 1 Error in find_vignette_product(name, by = "texi2pdf", engine = > engine) : Failed to locate the 'texi2pdf' output file (by engine > 'utils::Sweave') for vignette with name 'diffuStats'. The following > files exist in directory '.': 'bibliography.bib', > 'diffuStats-03_diff2.pdf', 'diffuStats-03_diff3.pdf', > 'diffuStats-04_plot.pdf', 'diffuStats-05_plot.pdf', > 'diffuStats-concordance.tex', 'diffuStats.Rnw', 'diffuStats.tex', > 'diffustats_fig_overview.eps', 'diffustats_fig_profiling.eps', > 'intro.R', 'intro.Rmd', 'intro.html' This keeps me worried as (1) I > cannot reproduce it, (2) I don't recall changes that can trigger this, > and (3) next release is this month. > Can this be related to the build system or is it a bug that I should fix? > > Thank you, > > Sergio > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
