On 10/25/2017 02:05 AM, Stian Lågstad wrote:
Thank you Martin. Are the core packages being kept as Github mirrors?
yes the core packages are maintained as github mirrors. Martin
On Wed, Oct 25, 2017 at 3:21 AM, Martin Morgan
<martin.mor...@roswellpark.org <mailto:martin.mor...@roswellpark.org>>
wrote:
On 10/24/2017 04:16 PM, Stian Lågstad wrote:
Can I install a package directly from a Bioconductor git
repository? Like I
can for example using devtools and a github repository like this:
`install_git("git://github.com/hadley/stringr.git
<http://github.com/hadley/stringr.git>")`? What would be the
link for a Bioconductor package?
install_git("https://git.bioconductor.org/packages/BiocGenerics.git
<https://git.bioconductor.org/packages/BiocGenerics.git>")
seems to work.
Also, can I link directly to a source code file somehow? Like I
can with
the github repository:
https://github.com/tidyverse/stringr/blob/master/R/case.R#L21
<https://github.com/tidyverse/stringr/blob/master/R/case.R#L21>
no, not at the moment, except of course for packages that are
mirrored on github
https://github.com/Bioconductor/BiocGenerics/blob/master/DESCRIPTION#L4
<https://github.com/Bioconductor/BiocGenerics/blob/master/DESCRIPTION#L4>
Martin
Thank you.
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