Hey,
Ok, I have made the changes to the DESCRIPTION file adding the c++11 you suggested, and also fixed the Rd files. I will try to push the package again soon and see what I get. Thanks, -- Ioannis Vardaxis Stipendiat IMF NTNU On 27/10/2017, 19:03, "Hervé Pagès" <hpa...@fredhutch.org> wrote: >Adding 'SystemRequirements: C++11' works for me (I'm on Linux): > >hpages@latitude:~/MACPET$ git diff >diff --git a/DESCRIPTION b/DESCRIPTION >index d8238b6..061d692 100644 >--- a/DESCRIPTION >+++ b/DESCRIPTION >@@ -7,6 +7,7 @@ Author: Ioannis Vardaxis > Maintainer: Ioannis Vardaxis <ioannis.varda...@ntnu.no> > Description: The MACPET package can be used for binding site analysis >for ChIA-PET data. MACPET reads ChIA-PET data in BAM or SAM for > License: GPL-3 >+SystemRequirements: C++11 > Encoding: UTF-8 > LazyData: true > ByteCompile: true > > >hpages@latitude:~$ Rbiocdev CMD INSTALL MACPET >* installing to library '/home/hpages/R/R-3.4.2-bioc36/library' >* installing *source* package 'MACPET' ... >** libs >g++ -std=gnu++11 -I/home/hpages/R/R-3.4.2-bioc36/include -DNDEBUG >-I"/home/hpages/R/R-3.4.2-bioc36/library/Rcpp/include" >-I/usr/local/include -fpic -g -O2 -c >PeakFinderSubFunctions_SGT_Rcpp.cpp -o PeakFinderSubFunctions_SGT_Rcpp.o >g++ -std=gnu++11 -I/home/hpages/R/R-3.4.2-bioc36/include -DNDEBUG >-I"/home/hpages/R/R-3.4.2-bioc36/library/Rcpp/include" >-I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o >g++ -std=gnu++11 -shared -L/home/hpages/R/R-3.4.2-bioc36/lib >-L/usr/local/lib64 -o MACPET.so PeakFinderSubFunctions_SGT_Rcpp.o >RcppExports.o -L/home/hpages/R/R-3.4.2-bioc36/lib -lR >installing to /home/hpages/R/R-3.4.2-bioc36/library/MACPET/libs >** R >** inst >** byte-compile and prepare package for lazy loading >** help >... > >Works for other BioC packages too e.g. InteractionSet >(showing compilation output on Mac): > > >https://bioconductor.org/checkResults/3.6/bioc-LATEST/InteractionSet/verac >ruz1-install.html > >It would be more useful if you showed us the full output of >'R CMD INSTALL'. > >But you should not hesitate to add 'SystemRequirements: C++11', bump >the version, and see what the single package builder says (provide the >link if you want to discuss it). > >Thanks, >H. > > >On 10/27/2017 09:50 AM, Ioannis Vardaxis wrote: >> Hey again, >> >> >> I think I have fixed the \insertRef macro problem now. However I still >> need help with the c++11 problems I mentioned in the previous email. >> >> My package builds and R-checks (and BiocChecks) with no errors and >>warning >> though. I get some notes from BiocCheck but I don¹t think they are of >> immediate importance. >> >> Best, >> > >-- >Hervé Pagès > >Program in Computational Biology >Division of Public Health Sciences >Fred Hutchinson Cancer Research Center >1100 Fairview Ave. N, M1-B514 >P.O. Box 19024 >Seattle, WA 98109-1024 > >E-mail: hpa...@fredhutch.org >Phone: (206) 667-5791 >Fax: (206) 667-1319 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
