Thanks so much for the help. I did manage to push with the SSH protocol. Will wait till the next build to see if it went through.
Best Kushal On 1 November 2017 at 16:18, Turaga, Nitesh <nitesh.tur...@roswellpark.org> wrote: > Hi Kushal, > > You also need to use the “SSH” protocol, and not the “HTTPS” protocol. > > Your upstream should be g...@git.bioconductor.org:packages/CountClust > > Best, > > Nitesh > > > On Nov 1, 2017, at 5:06 PM, Turaga, Nitesh <nitesh.tur...@roswellpark.org> > wrote: > > > > Hi Kushal, > > > > Can you please try, > > > > ssh -T g...@git.bioconductor.org -v > > > > > > Are you using the correct private key to your corresponding public key > on our machine? > > > > If not, please check the FAQ section bioconductor.org/developers/ > how-to/git/faq/ point#15. You can set up a config file to use the correct > private key. > > > > A snippet of your public key on our machine is, > > > > ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAACAQC8EgObkc/ > OI4nc8NE0sL4COb6uNaBIURhJoSyisz8i8/KWum0xFhav7ouDpMoZz0lgnlRaIYIR > quJx0R44ojDcsN45TBR8Rna4PNBscVJEsbonD0k3wi2OBySgwxTzL5aZl99H > zuAzthAPzFuskZDHahws9sPUtWMxioI6D5ZktVOb/QJbDJdFHFPXcd8l90wRJN0eGJXX9ex > cJBDU57ufEgDBx9vGv85GTwJjP4UQYLyjDIap2CbrdC+7nJ95fa7YcNUj2znVFcrNnkW9 > > > > Best, > > > > Nitesh > > > > > >> On Nov 1, 2017, at 2:23 PM, kushal kumar dey <kshl...@gmail.com> wrote: > >> > >> Hi Herve, > >> > >> Thanks for clarifying on the matter. I followed your instructions and > did *git > >> cherry-pick* to make the following changes > >> > >> - fix a bug in one of the functions > >> - add a citation > >> - fix the readme > >> > >> I bumped the version number from 1.4.0 to 1.4.1 and tried to push to the > >> release branch, but I when I run the command, > >> > >> git push upstream RELEASE_3_6 > >> > >> I meet with the following error > >> > >> *fatal: remote error: FATAL: W any packages/CountClust nobody DENIED by > >> fallthru* > >> > >> *(or you mis-spelled the reponame)* > >> > >> > >> You can check the branch I want to push on my Github > >> > >> > >> > >> *https://github.com/kkdey/CountClust/tree/RELEASE_3_6 > >> <https://github.com/kkdey/CountClust/tree/RELEASE_3_6>* > >> > >> > >> This is my output from *git remote -v * > >> > >> *origin https://github.com/kkdey/CountClust.git > >> <https://github.com/kkdey/CountClust.git> (fetch)* > >> > >> *origin https://github.com/kkdey/CountClust.git > >> <https://github.com/kkdey/CountClust.git> (push)* > >> > >> *upstream https://git.bioconductor.org/packages/CountClust > >> <https://git.bioconductor.org/packages/CountClust> (fetch)* > >> > >> *upstream https://git.bioconductor.org/packages/CountClust > >> <https://git.bioconductor.org/packages/CountClust> (push)* > >> > >> > >> Can you please let me know what I am doing wrong here and how I can > update > >> the release version? > >> > >> > >> Thank you so much! > >> > >> > >> Kushal > >> > >> > >> > >> > >> > >> On 30 October 2017 at 17:50, Hervé Pagès <hpa...@fredhutch.org> wrote: > >> > >>> Hi Kushal, > >>> > >>> If you push changes without bumping the version of your package, > >>> the update won't propagate. > >>> > >>> You only bumped the version to 1.5.1 today so you need to wait > >>> about 24 hours before seeing this reflected on the landing page > >>> for CountClust. > >>> > >>> Also please note that you did the version bump plus a few other > >>> commits (6 commits in total) in master today **after** we created > >>> the RELEASE_3_6 branch so these changes will only propagate to > >>> BioC 3.7 (the new devel version of BioC, starting tomorrow). > >>> If you want these changes to also propagate to the BioC 3.6 release > >>> you'll need to push them to the RELEASE_3_6 branch. This is > >>> typically done with 'git cherry-pick' as documented here: > >>> > >>> > >>> https://bioconductor.org/developers/how-to/git/bug-fix-in- > >>> release-and-devel/ > >>> > >>> Cheers, > >>> H. > >>> > >>> > >>> On 10/30/2017 02:41 PM, kushal kumar dey wrote: > >>> > >>>> Hi all, > >>>> > >>>> I am the author and maintainer of the CountClust package. I recently > >>>> submitted an update (version 1.5.1) to the package through > >>>> Bioconductor Git and I can access this updated version when I clone > the > >>>> source repository > >>>> > >>>> git clone https://urldefense.proofpoint. > com/v2/url?u=https-3A__git.bio > >>>> conductor.org_packages_CountClust&d=DwICAg&c=eRAMFD45gAfqt84 > >>>> VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-x3S > >>>> 8Sl0fsASITg_-ULMYIykoPk6Y0PqK2NoRjC43iA&s=YBM0DldFbCkrEBnHaB > >>>> n5X8-jb1yhm_GmSUWL6SIGLmo&e= > >>>> > >>>> However, the updated version is not available in the official > Bioconductor > >>>> 3.6 page, which still shows the version 1.3.0. > >>>> > >>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__www.bio > >>>> conductor.org_packages_3.6_bioc_html_CountClust.html&d=DwICA > >>>> g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvS > >>>> XAJJKaaPhzWA&m=-x3S8Sl0fsASITg_-ULMYIykoPk6Y0PqK2NoRjC43iA& > >>>> s=UfPX4T5l4JBfXBumCcQ-5YOm59i_xfX2OEILrQ3I2u0&e= > >>>> > >>>> Can you please let me know if the page has not been updated for the > >>>> packages yet or if I would need to do something at my end to update > the > >>>> version reported on the page? > >>>> > >>>> Thanks so much > >>>> > >>>> > >>> -- > >>> Hervé Pagès > >>> > >>> Program in Computational Biology > >>> Division of Public Health Sciences > >>> Fred Hutchinson Cancer Research Ce > >>> <https://maps.google.com/?q=n+Cancer+Research+Ce&entry=gmail&source=g > >nter > >>> 1100 Fairview Ave. N, M1-B514 > >>> P.O. Box 19024 > >>> Seattle, WA 98109-1024 > >>> > >>> E-mail: hpa...@fredhutch.org > >>> Phone: (206) 667-5791 > >>> Fax: (206) 667-1319 > >>> > >> > >> > >> > >> -- > >> Kushal K. Dey > >> Graduate Student > >> 5 th Year, Department of Statistics > >> University of Chicago > >> Contact: +1 312-709-0680 | kk...@uchicago.edu > >> > >> [[alternative HTML version deleted]] > >> > >> _______________________________________________ > >> Bioc-devel@r-project.org mailing list > >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > -- Kushal K. Dey Graduate Student 5 th Year, Department of Statistics University of Chicago Contact: +1 312-709-0680 | kk...@uchicago.edu [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
