Rhdf5lib is in the release branch too. I'm happy to help try and get mzR working with it.
On 2 January 2018 at 21:31, Martin Morgan <martin.mor...@roswellpark.org> wrote: > On 01/02/2018 03:16 PM, Neumann, Steffen wrote: > >> Dear BioC team, >> >> a happy new year to you as well ;-) >> >> for a while we have a build error for mzR on windows >> due to missing HDF5 libs: >> https://github.com/sneumann/mzR/issues/143 >> >> I am looking for some hints how to fix this. >> The https://bioconductor.org/packages/release/bioc/html/rhdf5.html >> package has embedded rhdf5/src/libwin/x64/libhdf5ForBioC-7.dll >> which we could try to use (It does not yet contain H5Cpp.h, >> and we'd have to ask Bernd Fischer et al to include it. >> > > Not a comprehensive answer or solution to release, but in devel there is > Rhdf5lib which contains both the C and C++ headers. (I believe that rhdf5 > will move to using this library in the near future) Martin > > >> ALternatively, it might already be present on the build machines, >> but we didn't have the include path set up: >> https://github.com/r-hub/rhub/issues/91 >> "... the location of the hdf5 libraries is defined as >> ${LIB_HDF5}/lib${R_ARCH}. " >> >> So, any hints which way to go for a fix ? >> >> Yours, >> Steffen >> >> > > This email message may contain legally privileged and/or...{{dropped:2}} > > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
