I have been able to make it work now, sorry for the previous email. Best, Leandro.
On Mon, Feb 12, 2018 at 4:52 AM, Leandro Roser <learo...@gmail.com> wrote: > > Dear BioC, > > > Using the devel version of Biostrings (2.47.9) i am obtaining an error > message with the 'reverse' function (below an example): > > > subject <- DNAStringSet(c("ATCATGCCATCATGAT", "ATTTGGAATCAT")) > > reverse(subject) > > Error in (function (classes, fdef, mtable) : > unable to find an inherited method for function ‘windows’ for signature > ‘"DNAString"’ > > > The same occurs in Travis with the devel version. The stable version is > working without errors. > > Could this error be due to a bug in the function? > > > This is my sessionInfo(): > > > sessionInfo() > R Under development (unstable) (2018-02-08 r74238) > Platform: x86_64-pc-linux-gnu (64-bit) > > attached base packages: > [1] stats4 parallel stats graphics grDevices utils datasets > [8] methods base > > other attached packages: > [1] BiocInstaller_1.29.4 ShortRead_1.37.1 > [3] GenomicAlignments_1.15.12 SummarizedExperiment_1.9.14 > [5] DelayedArray_0.5.18 matrixStats_0.53.1 > [7] Biobase_2.39.2 Rsamtools_1.31.3 > [9] GenomicRanges_1.31.19 GenomeInfoDb_1.15.5 > [11] Biostrings_2.47.9 XVector_0.19.8 > [13] IRanges_2.13.25 S4Vectors_0.17.31 > [15] BiocParallel_1.13.1 BiocGenerics_0.25.3 > > loaded via a namespace (and not attached): > [1] zlibbioc_1.25.0 lattice_0.20-35 hwriter_1.3.2 > [4] tools_3.5.0 grid_3.5.0 latticeExtra_0.6-28 > [7] Matrix_1.2-12 GenomeInfoDbData_1.1.0 RColorBrewer_1.1-2 > [10] bitops_1.0-6 RCurl_1.95-4.10 compiler_3.5.0 > > > Thanks, > > Leandro > > > -- > > Leandro Gabriel Roser > > UNSAM - Campus Miguelete IIB - Instituto de Investigaciones Biotecnológicas > > Av. 25 de Mayo y Francia CP(1650) > > San Martín, Prov. de Buenos Aires, Argentina. > > Tel. (5411)4006-1500 Fax: (5411)4006-1559 > -- Leandro Gabriel Roser UNSAM - Campus Miguelete IIB - Instituto de Investigaciones Biotecnológicas Av. 25 de Mayo y Francia CP(1650) San Martín, Prov. de Buenos Aires, Argentina. Tel. (5411)4006-1500 Fax: (5411)4006-1559 [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel