Dear Valerie, Sorry again, I still have problems. I updated it yesterday, I was able to do all the steps without problems but today I was checking the Bioconductor devel and no update has been registered.
Last Changed Date: 2017-10-30 12:54:19 -0500 (Mon, 30 Oct 2017) How should I proceed? What I did was following all these steps, and run without problems. http://bioconductor.org/developers/how-to/git/push-to-github-bioc/ Thanks a sorry again, Best, Alba 2018-03-05 16:08 GMT-05:00 alba gutierrez <alba.gutier...@upf.edu>: > Dear Valerie, > > Thank you so much for all your help. > I have configured my config file to point the key, there was a > misspelling problem. > I think I have updated correctly to Bioconductor know. > > Thanks for all your help, > > Best, > > Alba > > 2018-03-05 8:47 GMT-05:00 Obenchain, Valerie <Valerie.Obenchain@ > roswellpark.org>: > >> Please remember to cc bioc-devel to keep the conversation on the list. >> >> This is the key we have on file: >> ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQCrqcl4CgcR0SfE1Q7Jg+xuxkNlyi4J >> gTz6dtgDHH4uFStB34puUKSTBwlEmVR269XTB1uNVAmBWQIxZQtFybGFMdS6 >> fyA7A9mLeEvgJFIJP7wgXYh4ekzF72Ya/1cOLw4GJyPM6ImNfYC7GRJ8fVkd >> 4JtoiRSRaxJAkd0HY7JUAjexiBq2XAvUq+lY52E8H9ShZae8lvxUK2zFWZHp >> PEjHgXm5QZlzbUVYXlUUe09OaeKLAJz6cDMI4HLhKrtKdsRTyo05keU2P9Hu >> rsw9jSOp4ODAbuTN+LGTvxspVeLDzeJ4mlpPIzkBEH5gSyosZqAN5OtPuaZk6geSywTl6KM/ >> >> Have you configured your .ssh/config to point to this key? See #15 here: >> >> https://bioconductor.org/developers/how-to/git/faq/ >> >> Valerie >> >> >> >> >> On 03/03/2018 02:22 PM, alba gutierrez wrote: >> >> Dear Valerie, >> >> Thanks for all your help. >> I have solved the upstream issue, so know when I do: git remove -v I get >> the next: >> >> >> >> *origin https://github.com/aGutierrezSacristan/psygenet2r >> <https://github.com/aGutierrezSacristan/psygenet2r> (fetch) * >> >> *origin https://github.com/aGutierrezSacristan/psygenet2r >> <https://github.com/aGutierrezSacristan/psygenet2r> (push)* >> >> *upstream g...@git.bioconductor.org:packages/psygenet2r.git >> <g...@git.bioconductor.org:packages/psygenet2r.git> (fetch)* >> >> *upstream g...@git.bioconductor.org:packages/psygenet2r.git >> <g...@git.bioconductor.org:packages/psygenet2r.git> (push)* >> >> >> >> *I have done a minimal change in the vignette, updating my email account >> in order to try to do a push. I can do the git push origin master without >> problems but I still cannot do the git fetch upstream, that is what I >> should run to update the package in Bioconductor. I still get the same >> error message. * >> >> >> *g...@git.bioconductor.org <g...@git.bioconductor.org>: Permission denied >> (publickey).* >> >> >> >> * fatal: Could not read from remote repository. Please make sure you have >> the correct access rights and the repository exists. *I am doing my best >> but I do not know how to solve this. >> Sorry again. >> >> Best, >> >> Alba >> >> 2018-03-03 17:03 GMT-05:00 Obenchain, Valerie < >> valerie.obench...@roswellpark.org>: >> >>> On 03/03/2018 01:41 PM, alba gutierrez wrote: >>> >>> Dear Valerie, >>> >>> I have one additional question. >>> Although I appear as maintainer the package has two authors, and my >>> colleague Carles Hernandez-Ferrer, the other co-author is the one that used >>> to do all the updates. >>> Is there any possibility to add him as maintainer and that both of us >>> could update the package whenever needed? It would help a lot. >>> >>> >>> Yes he can be added but you need to make a request on bioc_devel. >>> Briefly explain why they need access. If he has not already, Carles will >>> need to submit ssh keys via the google doc. >>> >>> Valerie >>> >>> >>> >>> >>> >>> >>> Best, >>> >>> Alba >>> >>> >>> >>> 2018-03-03 9:31 GMT-05:00 alba gutierrez <alba.gutier...@upf.edu>: >>> >>>> Dear Valerie, >>>> >>>> Sorry for my delay answering. >>>> Thank you for your help. >>>> There is any other documentation that could help me to do that? I do >>>> not know how to change the upstream pointing to my package instead of >>>> Biocgenerics. >>>> >>>> Thank you so much for all your help! >>>> >>>> Best, >>>> >>>> Alba >>>> >>>> 2018-02-26 10:44 GMT-05:00 Obenchain, Valerie < >>>> valerie.obench...@roswellpark.org>: >>>> >>>>> The upstream points to BiocGenerics. My guess is that you followed the >>>>> example in the documentation too closely. You want to set the upstream to >>>>> point to your package (psygenet2r) not to BiocGenerics. >>>>> >>>>> Valerie >>>>> >>>>> >>>>> >>>>> >>>>> On 02/23/2018 01:44 PM, alba gutierrez wrote: >>>>> >>>>> Hi Valerie, >>>>> >>>>> Thanks for your answer. >>>>> The key is correct. >>>>> The output of git remote -V is: >>>>> >>>>> *origin https://github.com/aGutierrezSacristan/psygenet2r.git >>>>> <https://github.com/aGutierrezSacristan/psygenet2r.git> (fetch)* >>>>> >>>>> *origin https://github.com/aGutierrezSacristan/psygenet2r.git >>>>> <https://github.com/aGutierrezSacristan/psygenet2r.git> (push)* >>>>> >>>>> *upstream g...@git.bioconductor.org:packages/BiocGenerics.git >>>>> <g...@git.bioconductor.org:packages/BiocGenerics.git> (fetch)* >>>>> >>>>> *upstream g...@git.bioconductor.org:packages/BiocGenerics.git >>>>> <g...@git.bioconductor.org:packages/BiocGenerics.git> (push)* >>>>> >>>>> I don't know why it is not working. >>>>> >>>>> Thank you so much for your help, >>>>> >>>>> Best, >>>>> >>>>> Alba >>>>> >>>>> 2018-02-23 22:22 GMT+01:00 Obenchain, Valerie < >>>>> valerie.obench...@roswellpark.org>: >>>>> >>>>>> Hi Alba, >>>>>> >>>>>> We have one key for a.gutierrez-sacristan: >>>>>> >>>>>> ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQCrqcl4CgcR0SfE1Q7J...VeLDzeJ4m >>>>>> lpPIzkBEH5gSyosZqAN5OtPuaZk6geSywTl6KM/ >>>>>> >>>>>> If this is the key you're using you should have access. What is the >>>>>> output of >>>>>> >>>>>> git remote -v >>>>>> >>>>>> Valerie >>>>>> >>>>>> >>>>>> On 02/23/2018 09:16 AM, alba gutierrez wrote: >>>>>> >>>>>> Dear all, >>>>>> >>>>>> I am writing to you because I have some problems to update my >>>>>> package psygenet2r. After submitting my ssh-key and waiting to have the >>>>>> confirmation email I have been following the instructions >>>>>> herehttp://bioconductor.org/developers/how-to/git/maintain-github-bioc/ >>>>>> >>>>>> All steps work without any problem and as expected according to the web. >>>>>> But in step 7 I get this error: >>>>>> >>>>>> " >>>>>> >>>>>> git fetch upstream >>>>>> >>>>>> g...@git.bioconductor.org >>>>>> : Permission denied (publickey). >>>>>> >>>>>> fatal: Could not read from remote repository. >>>>>> >>>>>> " >>>>>> >>>>>> >>>>>> Could anyone help me with that? >>>>>> >>>>>> >>>>>> Thanks a lot, >>>>>> >>>>>> >>>>>> Best, >>>>>> >>>>>> >>>>>> Alba >>>>>> >>>>>> [[alternative HTML version deleted]] >>>>>> >>>>>> _______________________________________________bioc-de...@r-project.org >>>>>> mailing listhttps://stat.ethz.ch/mailman/listinfo/bioc-devel >>>>>> >>>>>> >>>>>> >>>>>> This email message may contain legally privileged and/or confidential >>>>>> information. 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If you have >> received this message in error, please notify the sender immediately by >> e-mail and delete this email message from your computer. Thank you. >> > > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
