Hi Marcel, Thanks for the reply. I tried your `wercker.yml` file (exactly as is), and still got the same issue:
* creating vignettes ... ERROR Error: processing vignette 'MyPackage-vignette.Rmd' failed with diagnostics: package ‘backports’ was installed by an R version with different internals; it needs to be reinstalled for use with this R version Execution halted Error: Command failed (1) In addition: Warning message: `cleanup` is deprecated Execution halted Check Failed, dumping logs find: ‘./*.Rcheck’: No such file or directory failed: Check Failed I'll leave it be for now, and see if I can get it to work with the new release in April. Also, did my email really arrive as "EXTERNAL" to the bioc-devel mailing list? That would be odd, I sent it from my bioc-devel registered email address :/ Kind regards, Kevin On Tue, Mar 20, 2018 at 5:03 PM, Marcel Ramos <marcel.ra...@roswellpark.org> wrote: > Hi Kevin, > > Being that I am unable to fully reproduce the issue, I can only say that > I have been successful in running the steps in the Wercker build for a > different package. > > Please do a *clean* pull of the Bioconductor image from docker hub by > removing any stale images > first. > > Here is the wercker.yml that I used: > > >> wercker build --docker-local > > box: bioconductor/devel_core2 > > build: > steps: > - script: > name: Install devtools > code: R -e "install.packages('devtools')" > - jimhester/r-dependencies: > cran_dependencies: backports > - jimhester/r-check > - jimhester/r-coverage > > > *Note:*I removed the r-lint step because it was having some issues with > xml. > > > Regards, > > Marcel > > > On 03/16/2018 07:53 AM, Kevin RUE wrote: > > Dear all, > > > > I'm usually a big Travis CI fan, but I'm having a go at Wercker, using > the > > bioconductor/devel_core2 docker (I have also tried the rocker 'parent' > ones > > without further success). > > I am running into the following issue: > > > > [...] > > * creating vignettes ... ERROR > > Error: processing vignette 'NewPackage-vignette.Rmd' failed with > > diagnostics: > > package ‘backports’ was installed by an R version with different > internals; > > it needs to be reinstalled for use with this R version > > Execution halted > > Error: Command failed (1) > > In addition: Warning message: > > `cleanup` is deprecated > > Execution halted > > Check Failed, dumping logs > > find: ‘./*.Rcheck’: No such file or directory > > failed: Check Failed > > > > I've tried adding a task that re-installs the `backports` package from > > source (CRAN), but I still get the same error. > > > > My wercker.yml looks like: > > box: bioconductor/devel_core2 > > build: > > steps: > > - script: > > name: Install devtools > > code: R -e "install.packages('devtools')" > > - script: > > name: Install backports > > code: R -e "install.packages('backports')" > > - jimhester/r-dependencies > > - jimhester/r-check > > - jimhester/r-lint > > - jimhester/r-coverage > > > > > > > > Any help/advice/experience with Wercker would be greatly appreciated! > > > > Best wishes, > > Kevin > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > This email message may contain legally privileged and/or...{{dropped:4}} > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel