Dear bioc-devel team,
I have made some changes in the package STAN and although it seems to
install correctly, I have problems with timeout and error in windows...
Could someone help me to improve the time?
https://bioconductor.org/checkResults/3.7/bioc-LATEST/STAN/
Best,
Rafael
On 28.03.2018 01:08, Martin Morgan wrote:
When I try and install the version on the master branch of the
Bioconductor git repository I get
STAN master$ Rdev --vanilla CMD INSTALL .
* installing to library ‘/home/mtmorgan/R/x86_64-pc-linux-gnu-library
...
** testing if installed package can be loaded
Error: package or namespace load failed for 'STAN' in
namespaceExport(ns, exports):
undefined exports: viterbi2Gviz
This comes about in a rather interesting way because the body of
plotViterbi is not defined
plotViterbi <- function(viterbi, regions, gen, chrom, from, to,
statecols, col)
#'
...
Can you please commit a version of the package that installs?
Martin
On 03/27/2018 06:42 PM, campos wrote:
Dear bioc-devel team,
I am developing the STAN packages and I am running into problems when
trying to build my package. The problem is the following:
Error in vignette_type(Outfile) :
Vignette product 'STAN.tex' does not have a known filename
extension ('NA')
ERROR: installing vignettes failed
* removing '/tmp/Rtmp925Iru/Rinst63471ff1efdc/STAN'
I tried to build the package in old versions (which they used to
work) and I run in other problems but in this case is:
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet =
quiet, :
Running 'texi2dvi' on 'STAN.tex' failed.
LaTeX errors:
! LaTeX Error: File `beramono.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
Could you help me with this problem?
Thank you very much,
Rafael
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