As mentioned before the workflows are in git and are now building on our standard build machines.
The build reports are generated mon, wed, fri and can be seen here http://bioconductor.org/checkResults/3.7/workflows-LATEST/ Moving forward we want to align how we treat workflows with how we treat the software and data experiment packages. Some of this can already be seen on the biocViews section of the website http://bioconductor.org/packages/devel/BiocViews.html#___Workflow You'll notice we started adding specific Workflow biocViews terms based on the categories that were used on the http://bioconductor.org/help/workflows/ page. We have updated the workflow packages to include appropriate biocViews from this page as well. The updated biocViews are already updated in the Bioconductor git.bioconductor.org repositories and should be reflected on the website after monday's build of the workflows. If anyone thinks additional workflow views would be helpful please email lori.sheph...@roswellpark.org or post for discussion on our community workflow slack feed https://community-bioc.slack.com/messages/CA17HQDGE/convo/CA17HQDGE-1522768000.000477/ Eventually, the http://bioconductor.org/help/workflows/ will be retired, as the workflows now have a standard landing page (linked off the biocViews page above). We will be adding redirects internally to hopefully protect any existing links in papers and such. Moving forward we will have a few additional requires for the vignettes of workflow packages. Namely that the vignette has a meaningful name and that it uses BiocStyle for formatting. This is an effort to standardize the workflows. Currently we will enforce BiocStyle::html_document. We are in the works of developing a html_workflow_template. We encourage any vignettes that are not using this BiocStyle format to update the workflow vignette as soon as possible - eventually this update will be required. Keep in mind also - that a proper version bump will be needed to trigger build and propagation of workflows. And since the workflows will be building on release and devel they should follow the similar guidelines regarding versioning http://bioconductor.org/developers/how-to/version-numbering/ We welcome any feedback Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
